PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64151-64200 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | ti | map_l125_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 92.5926 | 6 | 18 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m2_e1 | homalt | 43.2344 | 27.5790 | 100.0000 | 87.5507 | 3160 | 8298 | 3160 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | * | 86.6667 | 86.6667 | 86.6667 | 96.9512 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | het | 84.2105 | 88.8889 | 80.0000 | 96.5986 | 8 | 1 | 8 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.5926 | 2 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.2456 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l125_m2_e1 | * | 47.9740 | 31.5792 | 99.7724 | 91.5607 | 14906 | 32296 | 14903 | 34 | 8 | 23.5294 | |
| asubramanian-gatk | SNP | * | map_l125_m2_e1 | het | 51.2109 | 34.4568 | 99.6778 | 92.5521 | 10213 | 19427 | 10210 | 33 | 8 | 24.2424 | |
| asubramanian-gatk | SNP | * | map_l125_m2_e1 | hetalt | 37.8378 | 23.3333 | 100.0000 | 94.6970 | 7 | 23 | 7 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l125_m2_e1 | homalt | 42.1801 | 26.7283 | 99.9787 | 88.0838 | 4686 | 12846 | 4686 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | tv | map_l125_m2_e1 | * | 97.4430 | 98.7213 | 96.1975 | 78.1381 | 16444 | 213 | 16444 | 650 | 118 | 18.1538 | |
| ghariani-varprowl | SNP | tv | map_l125_m2_e1 | het | 96.7733 | 99.1851 | 94.4760 | 80.5468 | 10467 | 86 | 10467 | 612 | 94 | 15.3595 | |
| ghariani-varprowl | SNP | tv | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l125_m2_e1 | homalt | 98.8833 | 98.4030 | 99.3682 | 71.6795 | 5977 | 97 | 5977 | 38 | 24 | 63.1579 | |
| hfeng-pmm1 | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e1 | * | 98.2094 | 97.1478 | 99.2945 | 84.5735 | 1124 | 33 | 1126 | 8 | 1 | 12.5000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e1 | het | 97.6297 | 96.2338 | 99.0667 | 83.9125 | 741 | 29 | 743 | 7 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.8580 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.4609 | 99.1935 | 99.7297 | 84.2620 | 369 | 3 | 369 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e1 | * | 98.0268 | 97.0787 | 98.9936 | 86.3673 | 2160 | 65 | 2164 | 22 | 4 | 18.1818 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e1 | het | 97.3710 | 95.9517 | 98.8330 | 86.4526 | 1351 | 57 | 1355 | 16 | 1 | 6.2500 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 93.5065 | 40 | 3 | 40 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l125_m2_e1 | homalt | 99.2899 | 99.3540 | 99.2258 | 85.3746 | 769 | 5 | 769 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | C16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.5254 | 96.4286 | 87.0968 | 95.4210 | 27 | 1 | 27 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e1 | het | 93.0233 | 100.0000 | 86.9565 | 95.1782 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.5000 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.8750 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e1 | * | 96.8978 | 97.3224 | 96.4768 | 75.8806 | 16211 | 446 | 16211 | 592 | 214 | 36.1486 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e1 | het | 96.3919 | 97.9721 | 94.8619 | 74.2875 | 10339 | 214 | 10339 | 560 | 207 | 36.9643 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e1 | hetalt | 91.8033 | 93.3333 | 90.3226 | 87.9377 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e1 | homalt | 97.8321 | 96.2134 | 99.5062 | 78.2651 | 5844 | 230 | 5844 | 29 | 7 | 24.1379 | |
| gduggal-snapplat | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 28 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||