PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63601-63650 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 96.4286 | 96.4286 | 96.4286 | 95.7382 | 27 | 1 | 27 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 95.5556 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.0414 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e1 | * | 98.6603 | 98.6171 | 98.7035 | 86.0971 | 1141 | 16 | 1142 | 15 | 5 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e1 | het | 98.5762 | 98.8312 | 98.3226 | 85.8499 | 761 | 9 | 762 | 13 | 3 | 23.0769 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.7930 | 11 | 4 | 11 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.3271 | 99.1935 | 99.4609 | 85.1719 | 369 | 3 | 369 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | D6_15 | map_l125_m2_e1 | * | 97.6190 | 96.0938 | 99.1935 | 89.4288 | 123 | 5 | 123 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 97.1429 | 95.7746 | 98.5507 | 90.6631 | 68 | 3 | 68 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 86.8056 | 19 | 1 | 19 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 87.5862 | 36 | 1 | 36 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | * | 86.6667 | 86.6667 | 86.6667 | 95.5752 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | het | 88.8889 | 88.8889 | 88.8889 | 93.0233 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.2353 | 2 | 1 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.9275 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e1 | * | 99.1939 | 98.9655 | 99.4233 | 85.7143 | 861 | 9 | 862 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e1 | het | 98.9102 | 98.2283 | 99.6016 | 86.3661 | 499 | 9 | 500 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3566 | 19 | 0 | 19 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 83.5317 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 92.0000 | 86.7925 | 97.8723 | 91.0476 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e1 | het | 87.2727 | 80.0000 | 96.0000 | 91.1348 | 24 | 6 | 24 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.8788 | 8 | 0 | 8 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.0904 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l125_m2_e1 | * | 99.5225 | 99.4777 | 99.5673 | 71.4702 | 16570 | 87 | 16568 | 72 | 10 | 13.8889 | |
| hfeng-pmm3 | SNP | tv | map_l125_m2_e1 | het | 99.3837 | 99.3272 | 99.4402 | 72.3386 | 10482 | 71 | 10480 | 59 | 5 | 8.4746 | |
| hfeng-pmm3 | SNP | tv | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.8917 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l125_m2_e1 | homalt | 99.7612 | 99.7366 | 99.7859 | 69.7479 | 6058 | 16 | 6058 | 13 | 5 | 38.4615 | |
| jlack-gatk | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e1 | * | 94.2377 | 98.7900 | 90.0865 | 89.9406 | 1143 | 14 | 1145 | 126 | 6 | 4.7619 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e1 | het | 92.0567 | 99.0909 | 85.9551 | 90.9534 | 763 | 7 | 765 | 125 | 5 | 4.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 92.8571 | 86.6667 | 100.0000 | 96.1194 | 13 | 2 | 13 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.1892 | 98.6559 | 99.7283 | 85.0528 | 367 | 5 | 367 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e1 | * | 92.0152 | 94.5312 | 89.6296 | 92.3164 | 121 | 7 | 121 | 14 | 2 | 14.2857 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 89.3333 | 94.3662 | 84.8101 | 94.0197 | 67 | 4 | 67 | 12 | 1 | 8.3333 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 89.4737 | 85.0000 | 94.4444 | 86.3636 | 17 | 3 | 17 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6667 | 100.0000 | 97.3684 | 87.5000 | 37 | 0 | 37 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | * | map_l125_m2_e1 | * | 94.6989 | 98.2022 | 91.4369 | 90.8050 | 2185 | 40 | 2189 | 205 | 14 | 6.8293 | |
| jlack-gatk | INDEL | * | map_l125_m2_e1 | het | 92.6447 | 98.1534 | 87.7215 | 91.9821 | 1382 | 26 | 1386 | 194 | 9 | 4.6392 | |