PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63501-63550 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | * | map_l125_m2_e1 | * | 99.5664 | 99.4979 | 99.6351 | 71.1769 | 46965 | 237 | 46959 | 172 | 26 | 15.1163 | |
| hfeng-pmm3 | SNP | * | map_l125_m2_e1 | het | 99.4275 | 99.3320 | 99.5233 | 72.3246 | 29442 | 198 | 29436 | 141 | 13 | 9.2199 | |
| hfeng-pmm3 | SNP | * | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.8917 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l125_m2_e1 | homalt | 99.8003 | 99.7775 | 99.8231 | 68.9786 | 17493 | 39 | 17493 | 31 | 13 | 41.9355 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e1 | * | 98.8490 | 98.6207 | 99.0783 | 85.5790 | 858 | 12 | 860 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e1 | het | 98.4178 | 97.8346 | 99.0079 | 86.3821 | 497 | 11 | 499 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 93.5018 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 83.0475 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e1 | * | 92.0000 | 86.7925 | 97.8723 | 91.3761 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e1 | het | 89.2857 | 83.3333 | 96.1538 | 91.0035 | 25 | 5 | 25 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.6667 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.2652 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.2281 | 92.8571 | 89.6552 | 95.9270 | 26 | 2 | 26 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e1 | het | 92.6829 | 95.0000 | 90.4762 | 95.7831 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.8571 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.0930 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 87.5000 | 93.3333 | 82.3529 | 95.6633 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 94.7917 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.6667 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.1591 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e1 | * | 99.5907 | 99.5093 | 99.6723 | 71.0190 | 30419 | 150 | 30415 | 100 | 16 | 16.0000 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e1 | het | 99.4518 | 99.3346 | 99.5693 | 72.3168 | 18960 | 127 | 18956 | 82 | 8 | 9.7561 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.0000 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l125_m2_e1 | homalt | 99.8210 | 99.7993 | 99.8428 | 68.5547 | 11435 | 23 | 11435 | 18 | 8 | 44.4444 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e1 | * | 97.6000 | 95.3125 | 100.0000 | 89.3263 | 122 | 6 | 122 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e1 | het | 97.8417 | 95.7746 | 100.0000 | 90.7609 | 68 | 3 | 68 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 86.6667 | 18 | 2 | 18 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 86.7647 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e1 | * | 98.9647 | 99.0493 | 98.8803 | 84.7056 | 1146 | 11 | 1148 | 13 | 3 | 23.0769 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e1 | het | 98.7722 | 99.0909 | 98.4556 | 84.6291 | 763 | 7 | 765 | 12 | 2 | 16.6667 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 92.8571 | 86.6667 | 100.0000 | 95.7377 | 13 | 2 | 13 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.5962 | 99.4624 | 99.7305 | 83.3707 | 370 | 2 | 370 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e1 | * | 97.1888 | 94.5312 | 100.0000 | 90.5910 | 121 | 7 | 121 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e1 | het | 97.8417 | 95.7746 | 100.0000 | 92.0653 | 68 | 3 | 68 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 91.8919 | 85.0000 | 100.0000 | 87.6812 | 17 | 3 | 17 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 87.6289 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e1 | * | 98.8533 | 98.9655 | 98.7414 | 87.2204 | 861 | 9 | 863 | 11 | 2 | 18.1818 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e1 | het | 98.3282 | 98.2283 | 98.4283 | 88.5257 | 499 | 9 | 501 | 8 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.6667 | 19 | 0 | 19 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 83.5473 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e1 | * | 98.4147 | 99.1357 | 97.7041 | 87.0012 | 1147 | 10 | 1149 | 27 | 4 | 14.8148 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e1 | het | 97.9502 | 99.0909 | 96.8354 | 87.4264 | 763 | 7 | 765 | 25 | 2 | 8.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.9420 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.4624 | 99.4624 | 99.4624 | 84.6217 | 370 | 2 | 370 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||