PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63351-63400 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I1_5 | map_l125_m2_e1 | homalt | 97.1742 | 95.3353 | 99.0854 | 78.4211 | 327 | 16 | 325 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e1 | * | 72.2222 | 73.5849 | 70.9091 | 91.4197 | 39 | 14 | 39 | 16 | 8 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e1 | het | 78.3784 | 96.6667 | 65.9091 | 92.2807 | 29 | 1 | 29 | 15 | 8 | 53.3333 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e1 | homalt | 76.9231 | 66.6667 | 90.9091 | 84.5070 | 10 | 5 | 10 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m2_e1 | * | 78.8076 | 77.3438 | 80.3279 | 92.3845 | 99 | 29 | 98 | 24 | 17 | 70.8333 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m2_e1 | het | 85.0227 | 98.5915 | 74.7368 | 93.3287 | 70 | 1 | 71 | 24 | 17 | 70.8333 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | map_l125_m2_e1 | homalt | 87.8788 | 78.3784 | 100.0000 | 84.8315 | 29 | 8 | 27 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 50.0000 | 96.1443 | 0 | 0 | 31 | 31 | 4 | 12.9032 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 42.5926 | 96.2185 | 0 | 0 | 23 | 31 | 4 | 12.9032 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.5556 | 0 | 0 | 8 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m2_e1 | * | 67.7419 | 75.0000 | 61.7647 | 95.8231 | 21 | 7 | 21 | 13 | 4 | 30.7692 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m2_e1 | het | 72.0000 | 90.0000 | 60.0000 | 95.8791 | 18 | 2 | 18 | 12 | 3 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 75.0000 | 75.0000 | 95.3488 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | * | 92.6122 | 96.6292 | 88.9159 | 89.2090 | 1118 | 39 | 1099 | 137 | 20 | 14.5985 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | het | 91.2581 | 98.8312 | 84.7630 | 90.8034 | 761 | 9 | 751 | 135 | 18 | 13.3333 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | homalt | 97.5281 | 95.6989 | 99.4286 | 80.7692 | 356 | 16 | 348 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 33.3333 | 97.6000 | 0 | 0 | 2 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 98.2301 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m2_e1 | * | 74.1036 | 59.0623 | 99.4240 | 88.9166 | 9838 | 6819 | 9838 | 57 | 13 | 22.8070 | |
| gduggal-bwaplat | SNP | tv | map_l125_m2_e1 | het | 78.9711 | 65.6022 | 99.1834 | 90.4624 | 6923 | 3630 | 6923 | 57 | 13 | 22.8070 | |
| gduggal-bwaplat | SNP | tv | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3628 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m2_e1 | homalt | 64.6312 | 47.7445 | 100.0000 | 81.7242 | 2900 | 3174 | 2900 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m2_e1 | * | 33.3333 | 20.0000 | 100.0000 | 97.5806 | 3 | 12 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m2_e1 | het | 20.0000 | 11.1111 | 100.0000 | 98.9011 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 87.5000 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.0000 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l125_m2_e1 | * | 91.5391 | 94.9663 | 88.3507 | 90.2029 | 2113 | 112 | 2116 | 279 | 77 | 27.5986 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e1 | het | 90.4455 | 98.4375 | 83.6538 | 91.9035 | 1386 | 22 | 1392 | 272 | 73 | 26.8382 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 2.3256 | 0.0000 | 0.0000 | 1 | 42 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l125_m2_e1 | homalt | 96.3491 | 93.7984 | 99.0424 | 81.2275 | 726 | 48 | 724 | 7 | 4 | 57.1429 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e1 | * | 75.3654 | 60.6881 | 99.4067 | 87.7186 | 28646 | 18556 | 28653 | 171 | 47 | 27.4854 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e1 | het | 80.1160 | 67.2065 | 99.1643 | 89.4169 | 19920 | 9720 | 19934 | 168 | 44 | 26.1905 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3628 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l125_m2_e1 | homalt | 66.3796 | 49.6863 | 99.9655 | 80.4451 | 8711 | 8821 | 8704 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e1 | * | 76.0359 | 61.5656 | 99.3981 | 86.9873 | 18820 | 11749 | 18827 | 114 | 34 | 29.8246 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e1 | het | 80.7395 | 68.0935 | 99.1541 | 88.7617 | 12997 | 6090 | 13011 | 111 | 31 | 27.9279 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 91.3669 | 12 | 12 | 12 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l125_m2_e1 | homalt | 67.2881 | 50.7157 | 99.9483 | 79.7369 | 5811 | 5647 | 5804 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e1 | * | 75.7295 | 61.1494 | 99.4393 | 94.2939 | 532 | 338 | 532 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e1 | het | 80.0469 | 67.1260 | 99.1279 | 94.7816 | 341 | 167 | 341 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 68.9655 | 52.6316 | 100.0000 | 98.0843 | 10 | 9 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e1 | homalt | 69.0840 | 52.7697 | 100.0000 | 91.9982 | 181 | 162 | 181 | 0 | 0 | ||