PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63201-63250 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 5.8824 | 97.5540 | 0 | 0 | 1 | 16 | 2 | 12.5000 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 99.2537 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 6.6667 | 96.4871 | 0 | 0 | 1 | 14 | 2 | 14.2857 | |
| ciseli-custom | INDEL | * | map_l125_m2_e1 | * | 67.9362 | 62.5618 | 74.3207 | 90.8519 | 1392 | 833 | 1395 | 482 | 312 | 64.7303 | |
| ciseli-custom | INDEL | * | map_l125_m2_e1 | het | 69.1293 | 65.6960 | 72.9412 | 91.6361 | 925 | 483 | 930 | 345 | 205 | 59.4203 | |
| ciseli-custom | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 4.6512 | 0.0000 | 0.0000 | 2 | 41 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l125_m2_e1 | homalt | 67.5872 | 60.0775 | 77.2425 | 88.5833 | 465 | 309 | 465 | 137 | 107 | 78.1022 | |
| cchapple-custom | SNP | ti | map_l125_m2_e1 | * | 97.1333 | 97.0166 | 97.2504 | 74.6114 | 29657 | 912 | 29639 | 838 | 230 | 27.4463 | |
| cchapple-custom | SNP | ti | map_l125_m2_e1 | het | 96.4352 | 97.1970 | 95.6851 | 78.2763 | 18552 | 535 | 18561 | 837 | 229 | 27.3596 | |
| cchapple-custom | SNP | ti | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 24 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l125_m2_e1 | homalt | 98.3230 | 96.7097 | 99.9910 | 63.9684 | 11081 | 377 | 11078 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 65.1163 | 50.0000 | 93.3333 | 95.0000 | 14 | 14 | 14 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 66.6667 | 50.0000 | 100.0000 | 93.5065 | 10 | 10 | 10 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.5753 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | SNP | ti | map_l125_m2_e1 | * | 85.1950 | 75.2331 | 98.1978 | 84.5085 | 22998 | 7571 | 22994 | 422 | 45 | 10.6635 | |
| ckim-gatk | SNP | ti | map_l125_m2_e1 | het | 89.1406 | 82.1659 | 97.4093 | 86.6958 | 15683 | 3404 | 15679 | 417 | 41 | 9.8321 | |
| ckim-gatk | SNP | ti | map_l125_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 90.5063 | 15 | 9 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l125_m2_e1 | homalt | 77.8127 | 63.7109 | 99.9316 | 75.6597 | 7300 | 4158 | 7300 | 5 | 4 | 80.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | * | 90.3226 | 93.3333 | 87.5000 | 97.2603 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 97.0326 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.3077 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 98.1900 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | * | 93.1034 | 96.4286 | 90.0000 | 97.6905 | 27 | 1 | 27 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | het | 95.2381 | 100.0000 | 90.9091 | 97.8109 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 98.0469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e1 | * | 95.6863 | 95.3125 | 96.0630 | 93.0752 | 122 | 6 | 122 | 5 | 1 | 20.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 94.4444 | 95.7746 | 93.1507 | 94.5482 | 68 | 3 | 68 | 5 | 1 | 20.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 88.0000 | 18 | 2 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 89.5652 | 36 | 1 | 36 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 93.3333 | 92.4528 | 94.2308 | 94.1573 | 49 | 4 | 49 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 91.8033 | 93.3333 | 90.3226 | 94.7189 | 28 | 2 | 28 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.2308 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 94.1176 | 14 | 1 | 14 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m2_e1 | * | 84.7700 | 74.7850 | 97.8324 | 85.1204 | 35300 | 11902 | 35294 | 782 | 60 | 7.6726 | |
| ckim-gatk | SNP | * | map_l125_m2_e1 | het | 88.6934 | 81.7679 | 96.9006 | 87.2177 | 24236 | 5404 | 24230 | 775 | 56 | 7.2258 | |
| ckim-gatk | SNP | * | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m2_e1 | homalt | 77.2853 | 63.0048 | 99.9367 | 76.2699 | 11046 | 6486 | 11046 | 7 | 4 | 57.1429 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e1 | * | 96.1771 | 98.7900 | 93.6989 | 90.7298 | 1143 | 14 | 1145 | 77 | 6 | 7.7922 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e1 | het | 94.9121 | 99.0909 | 91.0714 | 91.6749 | 763 | 7 | 765 | 75 | 4 | 5.3333 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.8750 | 11 | 4 | 11 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.3271 | 99.1935 | 99.4609 | 86.4599 | 369 | 3 | 369 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m2_e1 | * | 97.7866 | 98.8506 | 96.7452 | 90.5203 | 860 | 10 | 862 | 29 | 3 | 10.3448 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 96.6215 | 98.2283 | 95.0664 | 92.2237 | 499 | 9 | 501 | 26 | 1 | 3.8462 | |