PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62701-62750 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | * | 85.6819 | 80.6649 | 91.3644 | 92.9665 | 922 | 221 | 1058 | 100 | 21 | 21.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | het | 85.2845 | 82.4607 | 88.3085 | 93.5494 | 630 | 134 | 710 | 94 | 20 | 21.2766 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 54.5455 | 40.0000 | 85.7143 | 99.0358 | 6 | 9 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | homalt | 87.4375 | 78.5714 | 98.5591 | 89.4013 | 286 | 78 | 342 | 5 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e0 | * | 81.6618 | 74.5446 | 90.2813 | 93.3861 | 1637 | 559 | 1765 | 190 | 25 | 13.1579 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e0 | het | 80.7999 | 75.4853 | 86.9195 | 94.1195 | 1050 | 341 | 1123 | 169 | 24 | 14.2012 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e0 | hetalt | 37.6569 | 23.8095 | 90.0000 | 99.0440 | 10 | 32 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e0 | homalt | 84.9635 | 75.6225 | 96.9372 | 90.0183 | 577 | 186 | 633 | 20 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e0 | * | 96.8780 | 97.2952 | 96.4644 | 75.8291 | 16043 | 446 | 16043 | 588 | 214 | 36.3946 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e0 | het | 96.3724 | 97.9506 | 94.8442 | 74.2096 | 10228 | 214 | 10228 | 556 | 207 | 37.2302 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e0 | hetalt | 91.8033 | 93.3333 | 90.3226 | 87.8431 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e0 | homalt | 97.8112 | 96.1775 | 99.5014 | 78.2474 | 5787 | 230 | 5787 | 29 | 7 | 24.1379 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e0 | * | 90.3981 | 94.5158 | 86.6242 | 88.6067 | 810 | 47 | 1088 | 168 | 70 | 41.6667 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e0 | het | 88.5120 | 98.7928 | 80.1693 | 90.7999 | 491 | 6 | 663 | 164 | 68 | 41.4634 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 42.1053 | 0.0000 | 0.0000 | 8 | 11 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e0 | homalt | 94.9724 | 91.2023 | 99.0676 | 78.9189 | 311 | 30 | 425 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | * | 88.0937 | 95.6255 | 81.6617 | 88.2856 | 1093 | 50 | 1376 | 309 | 102 | 33.0097 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | het | 85.7414 | 98.1675 | 76.1076 | 89.6257 | 750 | 14 | 962 | 302 | 95 | 31.4570 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 10 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | homalt | 94.7867 | 91.4835 | 98.3373 | 80.8636 | 333 | 31 | 414 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 44.5455 | 96.0686 | 0 | 0 | 49 | 61 | 6 | 9.8361 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 37.7551 | 96.0098 | 0 | 0 | 37 | 61 | 6 | 9.8361 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4912 | 0 | 0 | 12 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e0 | * | 22.8571 | 14.8148 | 50.0000 | 94.2446 | 4 | 23 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e0 | het | 28.5714 | 20.0000 | 50.0000 | 93.9394 | 4 | 16 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e0 | * | 22.9885 | 13.3333 | 83.3333 | 81.4433 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e0 | het | 35.0877 | 22.2222 | 83.3333 | 81.0526 | 2 | 7 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 98.9209 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 98.7952 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e0 | * | 71.5037 | 71.4286 | 71.5789 | 85.3395 | 90 | 36 | 136 | 54 | 37 | 68.5185 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e0 | het | 77.5447 | 88.7324 | 68.8623 | 85.9428 | 63 | 8 | 115 | 52 | 35 | 67.3077 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 57.8947 | 0.0000 | 0.0000 | 11 | 8 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e0 | homalt | 59.7865 | 44.4444 | 91.3043 | 78.7037 | 16 | 20 | 21 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e0 | * | 60.0321 | 64.1509 | 56.4103 | 82.6087 | 34 | 19 | 88 | 68 | 53 | 77.9412 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e0 | het | 66.1017 | 86.6667 | 53.4247 | 82.5150 | 26 | 4 | 78 | 68 | 53 | 77.9412 | |