PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62151-62200 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | ti | map_l125_m2_e0 | * | 99.2792 | 99.6596 | 98.9018 | 74.7286 | 30155 | 103 | 29629 | 329 | 21 | 6.3830 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e0 | het | 98.9240 | 99.5550 | 98.3009 | 76.7289 | 18792 | 84 | 18398 | 318 | 15 | 4.7170 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.4885 | 24 | 0 | 173 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l125_m2_e0 | homalt | 99.8667 | 99.8327 | 99.9006 | 70.5235 | 11339 | 19 | 11058 | 11 | 6 | 54.5455 | |
| gduggal-bwafb | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | * | 98.7944 | 99.6939 | 97.9109 | 74.9243 | 46580 | 143 | 45227 | 965 | 38 | 3.9378 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | het | 98.1728 | 99.6214 | 96.7658 | 76.7357 | 29207 | 111 | 28304 | 946 | 28 | 2.9598 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | hetalt | 99.7442 | 100.0000 | 99.4898 | 71.2188 | 30 | 0 | 195 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | homalt | 99.8542 | 99.8158 | 99.8925 | 71.0277 | 17343 | 32 | 16728 | 18 | 10 | 55.5556 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e0 | * | 97.8880 | 99.7574 | 96.0874 | 75.4411 | 16449 | 40 | 16356 | 666 | 17 | 2.5526 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e0 | het | 96.7900 | 99.7414 | 94.0082 | 76.9260 | 10415 | 27 | 10308 | 657 | 13 | 1.9787 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e0 | hetalt | 99.5349 | 100.0000 | 99.0741 | 73.5941 | 30 | 0 | 107 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e0 | homalt | 99.8247 | 99.7839 | 99.8655 | 72.1762 | 6004 | 13 | 5941 | 8 | 4 | 50.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e0 | * | 89.6552 | 86.6667 | 92.8571 | 94.6970 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.1176 | 88.8889 | 100.0000 | 94.4828 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 85.7143 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 96.1905 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e0 | * | 92.8571 | 96.2963 | 89.6552 | 95.3451 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e0 | het | 92.6829 | 95.0000 | 90.4762 | 95.1389 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.8944 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e0 | * | 97.8027 | 97.2222 | 98.3901 | 85.9597 | 2135 | 61 | 2139 | 35 | 6 | 17.1429 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e0 | het | 97.3979 | 96.7649 | 98.0392 | 86.1441 | 1346 | 45 | 1350 | 27 | 3 | 11.1111 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e0 | hetalt | 95.0000 | 90.4762 | 100.0000 | 91.2442 | 38 | 4 | 38 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l125_m2_e0 | homalt | 98.6859 | 98.4273 | 98.9460 | 85.1526 | 751 | 12 | 751 | 8 | 3 | 37.5000 | |
| raldana-dualsentieon | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C6_15 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C6_15 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C6_15 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e0 | * | 96.7480 | 94.4444 | 99.1667 | 87.9154 | 119 | 7 | 119 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e0 | het | 95.6522 | 92.9577 | 98.5075 | 89.2456 | 66 | 5 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 81.5217 | 17 | 2 | 17 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 87.0504 | 36 | 0 | 36 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e0 | * | 98.1990 | 97.7253 | 98.6772 | 85.2305 | 1117 | 26 | 1119 | 15 | 4 | 26.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e0 | het | 97.9668 | 97.6440 | 98.2917 | 85.0197 | 746 | 18 | 748 | 13 | 2 | 15.3846 | |