PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61901-61950 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | C6_15 | map_l125_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C6_15 | map_l125_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | * | map_l125_m2_e0 | * | 72.8494 | 74.4991 | 71.2712 | 87.8407 | 1636 | 560 | 1682 | 678 | 383 | 56.4897 | |
| anovak-vg | INDEL | * | map_l125_m2_e0 | het | 71.0853 | 69.0870 | 73.2026 | 89.4523 | 961 | 430 | 1008 | 369 | 100 | 27.1003 | |
| anovak-vg | INDEL | * | map_l125_m2_e0 | hetalt | 0.0000 | 35.7143 | 0.0000 | 0.0000 | 15 | 27 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l125_m2_e0 | homalt | 76.4959 | 86.5007 | 68.5656 | 84.5197 | 660 | 103 | 674 | 309 | 283 | 91.5858 | |
| anovak-vg | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 60.0000 | 97.7578 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 50.0000 | 97.9487 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4286 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l125_m2_e0 | * | 83.4201 | 85.3893 | 81.5397 | 87.6090 | 976 | 167 | 985 | 223 | 82 | 36.7713 | |
| anovak-vg | INDEL | D1_5 | map_l125_m2_e0 | het | 82.1558 | 88.4817 | 76.6741 | 87.9456 | 676 | 88 | 687 | 209 | 69 | 33.0144 | |
| anovak-vg | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 5 | 10 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l125_m2_e0 | homalt | 87.6855 | 81.0440 | 95.5128 | 86.5285 | 295 | 69 | 298 | 14 | 13 | 92.8571 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e0 | * | 76.3127 | 73.8095 | 78.9916 | 88.9713 | 93 | 33 | 94 | 25 | 15 | 60.0000 | |
| anovak-vg | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e0 | * | 65.5738 | 55.5556 | 80.0000 | 91.3420 | 15 | 12 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e0 | het | 70.8171 | 65.0000 | 77.7778 | 88.4615 | 13 | 7 | 14 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.3333 | 2 | 2 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | map_l125_m2_e0 | * | 81.4788 | 86.9291 | 76.6717 | 75.9478 | 26303 | 3955 | 26086 | 7937 | 1770 | 22.3006 | |
| anovak-vg | SNP | ti | map_l125_m2_e0 | het | 77.5170 | 89.8919 | 68.1370 | 78.1191 | 16968 | 1908 | 16853 | 7881 | 1719 | 21.8120 | |
| anovak-vg | SNP | ti | map_l125_m2_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 8 | 16 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l125_m2_e0 | homalt | 89.9353 | 82.1183 | 99.3971 | 67.3107 | 9327 | 2031 | 9233 | 56 | 51 | 91.0714 | |
| anovak-vg | INDEL | I1_5 | map_l125_m2_e0 | * | 59.4733 | 61.3769 | 57.6842 | 87.5801 | 526 | 331 | 548 | 402 | 273 | 67.9104 | |
| anovak-vg | INDEL | I1_5 | map_l125_m2_e0 | het | 49.5663 | 40.2414 | 64.5161 | 91.8362 | 200 | 297 | 220 | 121 | 15 | 12.3967 | |
| anovak-vg | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 36.8421 | 0.0000 | 0.0000 | 7 | 12 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l125_m2_e0 | homalt | 68.3603 | 93.5484 | 53.8588 | 82.4597 | 319 | 22 | 328 | 281 | 258 | 91.8149 | |
| astatham-gatk | INDEL | * | map_l125_m2_e0 | * | 96.5138 | 95.1275 | 97.9410 | 89.1008 | 2089 | 107 | 2093 | 44 | 9 | 20.4545 | |
| astatham-gatk | INDEL | * | map_l125_m2_e0 | het | 94.9267 | 92.7390 | 97.2201 | 89.8845 | 1290 | 101 | 1294 | 37 | 5 | 13.5135 | |
| astatham-gatk | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 93.1507 | 40 | 2 | 40 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l125_m2_e0 | homalt | 99.2806 | 99.4758 | 99.0862 | 86.9395 | 759 | 4 | 759 | 7 | 4 | 57.1429 | |
| anovak-vg | SNP | * | map_l125_m2_e0 | * | 81.2942 | 87.1691 | 76.1613 | 76.0893 | 40728 | 5995 | 40268 | 12604 | 2812 | 22.3104 | |
| anovak-vg | SNP | * | map_l125_m2_e0 | het | 77.4707 | 90.4768 | 67.7339 | 78.1138 | 26526 | 2792 | 26255 | 12507 | 2731 | 21.8358 | |
| anovak-vg | SNP | * | map_l125_m2_e0 | hetalt | 0.0000 | 30.0000 | 0.0000 | 0.0000 | 9 | 21 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l125_m2_e0 | homalt | 89.6412 | 81.6863 | 99.3125 | 67.9435 | 14193 | 3182 | 14013 | 97 | 81 | 83.5052 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e0 | * | 63.3663 | 60.3774 | 66.6667 | 88.0282 | 32 | 21 | 34 | 17 | 6 | 35.2941 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e0 | het | 53.8462 | 46.6667 | 63.6364 | 87.4046 | 14 | 16 | 21 | 12 | 2 | 16.6667 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 62.5000 | 0.0000 | 0.0000 | 5 | 3 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l125_m2_e0 | homalt | 78.7879 | 86.6667 | 72.2222 | 89.0244 | 13 | 2 | 13 | 5 | 4 | 80.0000 | |