PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61801-61850 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | ti | map_l125_m2_e0 | * | 99.3281 | 99.4316 | 99.2249 | 72.6504 | 30086 | 172 | 30082 | 235 | 42 | 17.8723 | |
| bgallagher-sentieon | SNP | ti | map_l125_m2_e0 | het | 99.0858 | 99.3537 | 98.8194 | 75.6140 | 18754 | 122 | 18750 | 224 | 33 | 14.7321 | |
| bgallagher-sentieon | SNP | ti | map_l125_m2_e0 | hetalt | 97.8723 | 95.8333 | 100.0000 | 70.5128 | 23 | 1 | 23 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l125_m2_e0 | homalt | 99.7354 | 99.5686 | 99.9028 | 65.6605 | 11309 | 49 | 11309 | 11 | 9 | 81.8182 | |
| bgallagher-sentieon | SNP | tv | map_l125_m2_e0 | * | 99.1716 | 99.4784 | 98.8667 | 73.4826 | 16403 | 86 | 16401 | 188 | 28 | 14.8936 | |
| bgallagher-sentieon | SNP | tv | map_l125_m2_e0 | het | 98.8667 | 99.4350 | 98.3049 | 76.2296 | 10383 | 59 | 10381 | 179 | 22 | 12.2905 | |
| bgallagher-sentieon | SNP | tv | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 76.0684 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l125_m2_e0 | homalt | 99.7171 | 99.5845 | 99.8500 | 66.6926 | 5992 | 25 | 5992 | 9 | 6 | 66.6667 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e0 | * | 93.2039 | 90.5660 | 96.0000 | 92.6254 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e0 | het | 91.5254 | 90.0000 | 93.1034 | 92.6209 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.3333 | 7 | 1 | 7 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.7778 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l125_m2_e0 | * | 99.2735 | 99.4499 | 99.0978 | 72.9518 | 46466 | 257 | 46460 | 423 | 70 | 16.5485 | |
| bgallagher-sentieon | SNP | * | map_l125_m2_e0 | het | 99.0076 | 99.3826 | 98.6355 | 75.8378 | 29137 | 181 | 29131 | 403 | 55 | 13.6476 | |
| bgallagher-sentieon | SNP | * | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 76.0684 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l125_m2_e0 | homalt | 99.7291 | 99.5741 | 99.8845 | 66.0253 | 17301 | 74 | 17301 | 20 | 15 | 75.0000 | |
| cchapple-custom | INDEL | * | map_l125_m2_e0 | * | 95.8417 | 96.5847 | 95.1101 | 87.3742 | 2121 | 75 | 2159 | 111 | 23 | 20.7207 | |
| cchapple-custom | INDEL | * | map_l125_m2_e0 | het | 94.6558 | 96.3336 | 93.0355 | 88.2941 | 1340 | 51 | 1416 | 106 | 19 | 17.9245 | |
| cchapple-custom | INDEL | * | map_l125_m2_e0 | hetalt | 0.0000 | 92.8571 | 0.0000 | 0.0000 | 39 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l125_m2_e0 | homalt | 98.2786 | 97.2477 | 99.3316 | 84.9709 | 742 | 21 | 743 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 66.6667 | 95.1445 | 0 | 0 | 28 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 56.2500 | 95.3148 | 0 | 0 | 18 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5055 | 0 | 0 | 10 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | * | 98.3684 | 98.7250 | 98.0144 | 88.4715 | 2168 | 28 | 2172 | 44 | 9 | 20.4545 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | het | 97.9642 | 98.4184 | 97.5142 | 89.0844 | 1369 | 22 | 1373 | 35 | 5 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 92.5512 | 40 | 2 | 40 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | homalt | 99.1509 | 99.4758 | 98.8281 | 86.7266 | 759 | 4 | 759 | 9 | 4 | 44.4444 | |
| bgallagher-sentieon | INDEL | C6_15 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e0 | * | 93.1034 | 100.0000 | 87.0968 | 96.9578 | 27 | 0 | 27 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e0 | het | 95.2381 | 100.0000 | 90.9091 | 97.0549 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.6170 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.3333 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e0 | * | 98.6532 | 99.2126 | 98.1002 | 87.4743 | 1134 | 9 | 1136 | 22 | 5 | 22.7273 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e0 | het | 98.3172 | 99.2147 | 97.4359 | 87.7185 | 758 | 6 | 760 | 20 | 3 | 15.0000 | |