PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61651-61700 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | * | 89.6552 | 86.6667 | 92.8571 | 97.5986 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 97.1510 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.0000 | 2 | 1 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 99.0338 | 2 | 1 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 88.0734 | 90.5660 | 85.7143 | 93.5409 | 48 | 5 | 48 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 83.8710 | 86.6667 | 81.2500 | 94.3860 | 26 | 4 | 26 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 91.0256 | 7 | 1 | 7 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e0 | homalt | 93.7500 | 100.0000 | 88.2353 | 92.2374 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_l125_m2_e0 | * | 98.5850 | 98.3151 | 98.8564 | 86.6789 | 2159 | 37 | 2161 | 25 | 8 | 32.0000 | |
| jli-custom | INDEL | * | map_l125_m2_e0 | het | 98.3415 | 97.9871 | 98.6985 | 86.8786 | 1363 | 28 | 1365 | 18 | 4 | 22.2222 | |
| jli-custom | INDEL | * | map_l125_m2_e0 | hetalt | 95.0000 | 90.4762 | 100.0000 | 93.1777 | 38 | 4 | 38 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l125_m2_e0 | homalt | 99.2147 | 99.3447 | 99.0850 | 85.6014 | 758 | 5 | 758 | 7 | 4 | 57.1429 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e0 | * | 96.2945 | 98.3664 | 94.3080 | 90.1657 | 843 | 14 | 845 | 51 | 5 | 9.8039 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e0 | het | 94.4890 | 97.9879 | 91.2313 | 91.8168 | 487 | 10 | 489 | 47 | 3 | 6.3830 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 94.5122 | 18 | 1 | 18 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.9751 | 99.1202 | 98.8304 | 84.6843 | 338 | 3 | 338 | 4 | 2 | 50.0000 | |
| jlack-gatk | SNP | ti | map_l125_m2_e0 | * | 96.7576 | 98.8796 | 94.7247 | 79.7203 | 29919 | 339 | 29915 | 1666 | 151 | 9.0636 | |
| jlack-gatk | SNP | ti | map_l125_m2_e0 | het | 95.3314 | 99.0570 | 91.8760 | 83.3511 | 18698 | 178 | 18694 | 1653 | 140 | 8.4695 | |
| jlack-gatk | SNP | ti | map_l125_m2_e0 | hetalt | 93.8776 | 95.8333 | 92.0000 | 84.9398 | 23 | 1 | 23 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l125_m2_e0 | homalt | 99.2423 | 98.5913 | 99.9019 | 66.3888 | 11198 | 160 | 11198 | 11 | 9 | 81.8182 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e0 | * | 94.2098 | 98.7752 | 90.0478 | 89.8856 | 1129 | 14 | 1131 | 125 | 6 | 4.8000 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e0 | het | 92.0548 | 99.0838 | 85.9570 | 90.8790 | 757 | 7 | 759 | 124 | 5 | 4.0323 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 96.0606 | 13 | 2 | 13 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.1713 | 98.6264 | 99.7222 | 85.0436 | 359 | 5 | 359 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 92.6641 | 95.2381 | 90.2256 | 92.2449 | 120 | 6 | 120 | 13 | 1 | 7.6923 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 89.3333 | 94.3662 | 84.8101 | 93.8807 | 67 | 4 | 67 | 12 | 1 | 8.3333 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 91.8919 | 89.4737 | 94.4444 | 85.9375 | 17 | 2 | 17 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 87.8378 | 36 | 0 | 36 | 0 | 0 | ||
| jlack-gatk | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | * | 87.7193 | 92.5926 | 83.3333 | 97.3545 | 25 | 2 | 25 | 5 | 1 | 20.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | het | 92.6829 | 95.0000 | 90.4762 | 97.6000 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 92.5000 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.2603 | 4 | 0 | 4 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | * | map_l125_m2_e0 | * | 94.7169 | 98.2240 | 91.4515 | 90.7417 | 2157 | 39 | 2161 | 202 | 13 | 6.4356 | |
| jlack-gatk | INDEL | * | map_l125_m2_e0 | het | 92.6228 | 98.1308 | 87.7002 | 91.9195 | 1365 | 26 | 1369 | 192 | 9 | 4.6875 | |
| jlack-gatk | INDEL | * | map_l125_m2_e0 | hetalt | 93.8272 | 90.4762 | 97.4359 | 93.7500 | 38 | 4 | 38 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l125_m2_e0 | homalt | 98.8204 | 98.8204 | 98.8204 | 86.3286 | 754 | 9 | 754 | 9 | 4 | 44.4444 | |
| hfeng-pmm3 | SNP | tv | map_l125_m2_e0 | * | 99.5176 | 99.4724 | 99.5629 | 71.4177 | 16402 | 87 | 16400 | 72 | 10 | 13.8889 | |
| hfeng-pmm3 | SNP | tv | map_l125_m2_e0 | het | 99.3771 | 99.3201 | 99.4342 | 72.2814 | 10371 | 71 | 10369 | 59 | 5 | 8.4746 | |