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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 119 120 121 122 123 124 125 126 127 ... 1720 1721 » 6101-6150 / 86044 show all
jlack-gatk	INDEL	D1_5	HG002complexvar	*	99.4067	99.2878	99.5259	58.0276	32482	233	32539	155	92	59.3548
jlack-gatk	INDEL	D1_5	HG002complexvar	het	99.5570	99.5377	99.5763	55.9428	20669	96	20681	88	29	32.9545
jlack-gatk	INDEL	D1_5	HG002complexvar	hetalt	93.7719	91.1243	96.5779	72.4607	1232	120	1270	45	42	93.3333
jlack-gatk	INDEL	D1_5	HG002complexvar	homalt	99.8161	99.8396	99.7926	59.1577	10581	17	10588	22	21	95.4545
jlack-gatk	INDEL	D6_15	HG002complexvar	*	97.2520	96.7937	97.7147	58.0825	5132	170	5131	120	96	80.0000
jlack-gatk	INDEL	D6_15	HG002complexvar	het	98.1096	98.1090	98.1101	59.2917	3061	59	3011	58	40	68.9655
jlack-gatk	INDEL	D6_15	HG002complexvar	hetalt	92.4487	89.3386	95.7831	48.0438	905	108	954	42	37	88.0952
jlack-gatk	INDEL	D6_15	HG002complexvar	homalt	99.0234	99.7434	98.3137	61.3807	1166	3	1166	20	19	95.0000
jlack-gatk	INDEL	C6_15	HG002complexvar	*	0.0000	100.0000	0.0000	0.0000	4	0	0	0	0
jlack-gatk	INDEL	C6_15	HG002complexvar	het	0.0000	100.0000	0.0000	0.0000	4	0	0	0	0
jlack-gatk	INDEL	C6_15	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	SNP	tv	HG002complexvar	*	99.8576	99.7315	99.9841	21.7544	245491	661	245404	39	15	38.4615
hfeng-pmm3	SNP	tv	HG002complexvar	het	99.7826	99.5854	99.9807	20.9857	150106	625	150027	29	6	20.6897
hfeng-pmm3	SNP	tv	HG002complexvar	hetalt	99.6764	99.3548	100.0000	37.5254	308	2	308	0	0
hfeng-pmm3	SNP	tv	HG002complexvar	homalt	99.9769	99.9643	99.9895	22.8756	95077	34	95069	10	9	90.0000
jlack-gatk	INDEL	*	HG002complexvar	*	99.2231	99.0863	99.3603	58.0205	76235	703	76113	490	357	72.8571
jlack-gatk	INDEL	*	HG002complexvar	het	99.3807	99.2967	99.4647	57.6016	45887	325	45527	245	124	50.6122
jlack-gatk	INDEL	*	HG002complexvar	hetalt	94.5505	91.1868	98.1719	68.2876	3373	326	3598	67	62	92.5373
jlack-gatk	INDEL	*	HG002complexvar	homalt	99.5756	99.8076	99.3448	56.8540	26975	52	26988	178	171	96.0674
jlack-gatk	INDEL	C1_5	HG002complexvar	*	0.0000	85.7143	0.0000	0.0000	6	1	0	0	0
jlack-gatk	INDEL	C1_5	HG002complexvar	het	0.0000	85.7143	0.0000	0.0000	6	1	0	0	0
jlack-gatk	INDEL	C1_5	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C1_5	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C6_15	HG002complexvar	*	0.0000	100.0000	0.0000	0.0000	4	0	0	0	0
hfeng-pmm2	INDEL	C6_15	HG002complexvar	het	0.0000	100.0000	0.0000	0.0000	4	0	0	0	0
hfeng-pmm2	INDEL	C6_15	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C6_15	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	D6_15	HG002complexvar	*	96.9573	94.6624	99.3663	56.8597	5019	283	5018	32	26	81.2500
hfeng-pmm2	INDEL	D6_15	HG002complexvar	het	95.8142	92.5641	99.3009	57.1386	2888	232	2841	20	16	80.0000
hfeng-pmm2	INDEL	D6_15	HG002complexvar	hetalt	97.4274	95.1629	99.8024	48.6555	964	49	1010	2	1	50.0000
hfeng-pmm2	INDEL	D6_15	HG002complexvar	homalt	99.4885	99.8289	99.1504	61.5359	1167	2	1167	10	9	90.0000
hfeng-pmm2	INDEL	I16_PLUS	HG002complexvar	*	98.3417	97.4026	99.2991	67.2031	1275	34	1275	9	8	88.8889
hfeng-pmm2	INDEL	I16_PLUS	HG002complexvar	het	98.8593	97.7444	100.0000	63.5519	650	15	628	0	0
hfeng-pmm2	INDEL	I16_PLUS	HG002complexvar	hetalt	96.6649	94.3284	99.1202	69.9029	316	19	338	3	3	100.0000
hfeng-pmm2	INDEL	I16_PLUS	HG002complexvar	homalt	99.0385	100.0000	98.0952	70.2550	309	0	309	6	5	83.3333
hfeng-pmm2	INDEL	I1_5	HG002complexvar	*	99.5522	99.2597	99.8464	56.6743	33116	247	33159	51	38	74.5098
hfeng-pmm2	INDEL	I1_5	HG002complexvar	het	99.4756	99.0819	99.8724	57.6818	18022	167	18002	23	11	47.8261
hfeng-pmm2	INDEL	I1_5	HG002complexvar	hetalt	98.0250	96.2341	99.8839	71.1509	1661	65	1720	2	2	100.0000
hfeng-pmm2	INDEL	I1_5	HG002complexvar	homalt	99.8477	99.8885	99.8069	52.0702	13433	15	13437	26	25	96.1538
hfeng-pmm2	INDEL	I6_15	HG002complexvar	*	98.1553	97.1411	99.1910	57.4123	4655	137	4659	38	37	97.3684
hfeng-pmm2	INDEL	I6_15	HG002complexvar	het	98.4267	97.0276	99.8668	58.9949	2285	70	2249	3	2	66.6667
hfeng-pmm2	INDEL	I6_15	HG002complexvar	hetalt	97.2701	94.6852	100.0000	56.4680	1158	65	1198	0	0
hfeng-pmm2	INDEL	I6_15	HG002complexvar	homalt	98.4965	99.8353	97.1933	55.2244	1212	2	1212	35	35	100.0000
hfeng-pmm2	INDEL	D1_5	HG002complexvar	*	99.1842	98.4778	99.9009	57.1533	32217	498	32268	32	21	65.6250
hfeng-pmm2	INDEL	D1_5	HG002complexvar	het	98.9180	97.9581	99.8969	54.5187	20341	424	20346	21	14	66.6667
hfeng-pmm2	INDEL	D1_5	HG002complexvar	hetalt	97.7751	95.7840	99.8506	73.3373	1295	57	1337	2	0	0.0000
hfeng-pmm2	INDEL	D1_5	HG002complexvar	homalt	99.8773	99.8396	99.9150	58.5881	10581	17	10585	9	7	77.7778
hfeng-pmm2	INDEL	C1_5	HG002complexvar	*	0.0000	85.7143	0.0000	0.0000	6	1	0	0	0
hfeng-pmm2	INDEL	C1_5	HG002complexvar	het	0.0000	85.7143	0.0000	0.0000	6	1	0	0	0

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