PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61251-61300 / 86044 show all | |||||||||||||||
| dgrover-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.1791 | 24 | 0 | 24 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_l125_m1_e0 | homalt | 99.6414 | 99.3753 | 99.9090 | 63.5537 | 10976 | 69 | 10976 | 10 | 8 | 80.0000 | |
| dgrover-gatk | SNP | tv | map_l125_m1_e0 | * | 99.2231 | 99.2882 | 99.1581 | 73.2603 | 15902 | 114 | 15900 | 135 | 27 | 20.0000 | |
| dgrover-gatk | SNP | tv | map_l125_m1_e0 | het | 99.0398 | 99.3285 | 98.7528 | 76.5217 | 10058 | 68 | 10056 | 127 | 22 | 17.3228 | |
| dgrover-gatk | SNP | tv | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 72.3810 | 29 | 1 | 29 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l125_m1_e0 | homalt | 99.5463 | 99.2321 | 99.8626 | 64.6877 | 5815 | 45 | 5815 | 8 | 5 | 62.5000 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 98.5322 | 98.6213 | 98.4432 | 87.6162 | 1073 | 15 | 1075 | 17 | 4 | 23.5294 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 98.2870 | 98.6226 | 97.9536 | 88.0013 | 716 | 10 | 718 | 15 | 2 | 13.3333 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.8188 | 12 | 1 | 12 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.1379 | 98.8539 | 99.4236 | 85.6730 | 345 | 4 | 345 | 2 | 2 | 100.0000 | |
| ckim-isaac | SNP | * | map_l125_m1_e0 | * | 73.2800 | 57.9125 | 99.7492 | 70.8000 | 26250 | 19077 | 26252 | 66 | 16 | 24.2424 | |
| ckim-isaac | SNP | * | map_l125_m1_e0 | het | 76.8418 | 62.5247 | 99.6632 | 73.8033 | 17752 | 10640 | 17754 | 60 | 10 | 16.6667 | |
| ckim-isaac | SNP | * | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 78.5714 | 15 | 15 | 15 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l125_m1_e0 | homalt | 66.8137 | 50.1804 | 99.9411 | 61.4585 | 8483 | 8422 | 8483 | 5 | 5 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m1_e0 | * | 82.3612 | 70.6024 | 98.8196 | 86.4457 | 586 | 244 | 586 | 7 | 2 | 28.5714 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m1_e0 | het | 85.6476 | 75.5144 | 98.9218 | 88.5352 | 367 | 119 | 367 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 90.9091 | 88.2353 | 93.7500 | 90.8571 | 15 | 2 | 15 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m1_e0 | homalt | 76.5478 | 62.3853 | 99.0291 | 78.6307 | 204 | 123 | 204 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l125_m1_e0 | * | 50.7042 | 33.9623 | 100.0000 | 94.6903 | 18 | 35 | 18 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m1_e0 | het | 46.1538 | 30.0000 | 100.0000 | 96.7611 | 9 | 21 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 84.0909 | 6 | 2 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m1_e0 | homalt | 33.3333 | 20.0000 | 100.0000 | 93.7500 | 3 | 12 | 3 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l125_m1_e0 | * | 70.3696 | 54.3831 | 99.6682 | 71.7978 | 8710 | 7306 | 8712 | 29 | 9 | 31.0345 | |
| ckim-isaac | SNP | tv | map_l125_m1_e0 | het | 74.2974 | 59.2633 | 99.5522 | 74.3164 | 6001 | 4125 | 6003 | 27 | 7 | 25.9259 | |
| ckim-isaac | SNP | tv | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 78.5714 | 15 | 15 | 15 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l125_m1_e0 | homalt | 62.9734 | 45.9727 | 99.9258 | 63.6902 | 2694 | 3166 | 2694 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_l125_m1_e0 | * | 96.8785 | 96.4404 | 97.3206 | 91.1117 | 2032 | 75 | 2034 | 56 | 8 | 14.2857 | |
| ckim-vqsr | INDEL | * | map_l125_m1_e0 | het | 95.6747 | 95.2060 | 96.1480 | 92.4743 | 1271 | 64 | 1273 | 51 | 5 | 9.8039 | |
| ckim-vqsr | INDEL | * | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 93.0556 | 35 | 5 | 35 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l125_m1_e0 | homalt | 99.2481 | 99.1803 | 99.3160 | 86.5054 | 726 | 6 | 726 | 5 | 3 | 60.0000 | |
| ckim-vqsr | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | ti | map_l125_m1_e0 | * | 74.8103 | 59.8330 | 99.7896 | 70.2803 | 17552 | 11783 | 17552 | 37 | 7 | 18.9189 | |
| ckim-isaac | SNP | ti | map_l125_m1_e0 | het | 78.2097 | 64.3326 | 99.7200 | 73.5328 | 11751 | 6515 | 11751 | 33 | 3 | 9.0909 | |
| ckim-isaac | SNP | ti | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 74.4681 | 12 | 12 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l125_m1_e0 | homalt | 68.7652 | 52.4129 | 99.9482 | 60.3233 | 5789 | 5256 | 5789 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_l125_m1_e0 | * | 0.0000 | 100.0000 | 0 | 15 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l125_m1_e0 | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l125_m2_e0 | * | 0.0000 | 100.0000 | 0 | 15 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l125_m2_e0 | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | map_l125_m2_e0 | * | 50.7042 | 33.9623 | 100.0000 | 95.3368 | 18 | 35 | 18 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m2_e0 | het | 46.1538 | 30.0000 | 100.0000 | 97.0803 | 9 | 21 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 87.5000 | 6 | 2 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m2_e0 | homalt | 33.3333 | 20.0000 | 100.0000 | 94.6429 | 3 | 12 | 3 | 0 | 0 | ||