PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61051-61100 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 87.7698 | 18 | 1 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 81.3253 | 33 | 1 | 31 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m1_e0 | * | 76.5957 | 66.6667 | 90.0000 | 84.1270 | 10 | 5 | 9 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m1_e0 | het | 82.3529 | 77.7778 | 87.5000 | 78.3784 | 7 | 2 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l125_m1_e0 | * | 98.9740 | 98.1071 | 99.8563 | 58.5564 | 44469 | 858 | 44470 | 64 | 15 | 23.4375 | |
| ltrigg-rtg2 | SNP | * | map_l125_m1_e0 | het | 98.5086 | 97.2457 | 99.8048 | 55.1586 | 27610 | 782 | 27610 | 54 | 6 | 11.1111 | |
| ltrigg-rtg2 | SNP | * | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 61.1111 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l125_m1_e0 | homalt | 99.7511 | 99.5623 | 99.9406 | 63.1402 | 16831 | 74 | 16832 | 10 | 9 | 90.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.1712 | 97.1084 | 99.2574 | 80.1572 | 806 | 24 | 802 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m1_e0 | het | 97.2781 | 95.6790 | 98.9316 | 78.1818 | 465 | 21 | 463 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4654 | 17 | 0 | 19 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.3846 | 99.0826 | 99.6885 | 78.7135 | 324 | 3 | 320 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.0469 | 96.8750 | 99.2474 | 78.8205 | 1054 | 34 | 1055 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | het | 97.8418 | 96.6942 | 99.0169 | 76.5404 | 702 | 24 | 705 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 97.2973 | 11 | 2 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.6971 | 97.7077 | 99.7067 | 78.8724 | 341 | 8 | 340 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m1_e0 | * | 95.0495 | 90.5660 | 100.0000 | 85.6250 | 48 | 5 | 46 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m1_e0 | het | 90.9091 | 83.3333 | 100.0000 | 85.0932 | 25 | 5 | 24 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.2500 | 8 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.0127 | 15 | 0 | 15 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l125_m1_e0 | * | 92.6432 | 90.5983 | 94.7826 | 88.7586 | 106 | 11 | 109 | 6 | 5 | 83.3333 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m1_e0 | het | 94.9763 | 96.8750 | 93.1507 | 89.2647 | 62 | 2 | 68 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 73.3333 | 57.8947 | 100.0000 | 88.8889 | 11 | 8 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l125_m1_e0 | homalt | 97.0588 | 97.0588 | 97.0588 | 87.4539 | 33 | 1 | 33 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | * | 97.9556 | 97.7219 | 98.1905 | 98.1653 | 2059 | 48 | 2062 | 38 | 14 | 36.8421 | |
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | het | 97.6831 | 97.6779 | 97.6883 | 86.3886 | 1304 | 31 | 1310 | 31 | 10 | 32.2581 | |
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 93.5841 | 32 | 8 | 29 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | homalt | 98.9056 | 98.7705 | 99.0411 | 85.3443 | 723 | 9 | 723 | 7 | 4 | 57.1429 | |
| egarrison-hhga | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D1_5 | map_l125_m1_e0 | * | 98.3456 | 98.3456 | 98.3456 | 85.8665 | 1070 | 18 | 1070 | 18 | 5 | 27.7778 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m1_e0 | het | 98.0069 | 98.2094 | 97.8052 | 85.5214 | 713 | 13 | 713 | 16 | 3 | 18.7500 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 95.6000 | 11 | 2 | 11 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.2826 | 99.1404 | 99.4253 | 85.5781 | 346 | 3 | 346 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | * | 90.5660 | 88.8889 | 92.3077 | 91.7460 | 24 | 3 | 24 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.2381 | 100.0000 | 90.9091 | 89.9543 | 20 | 0 | 20 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 93.3333 | 1 | 2 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 96.2963 | 3 | 1 | 3 | 0 | 0 | ||