PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60701-60750 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D16_PLUS | map_l125_m1_e0 | * | 86.2069 | 92.5926 | 80.6452 | 97.3436 | 25 | 2 | 25 | 6 | 1 | 16.6667 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m1_e0 | het | 86.3636 | 95.0000 | 79.1667 | 97.2603 | 19 | 1 | 19 | 5 | 1 | 20.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.2857 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 98.0469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D1_5 | map_l125_m1_e0 | * | 97.0194 | 97.3346 | 96.7063 | 87.6399 | 1059 | 29 | 1057 | 36 | 5 | 13.8889 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m1_e0 | het | 96.3840 | 97.3829 | 95.4054 | 88.2297 | 707 | 19 | 706 | 34 | 3 | 8.8235 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 86.9565 | 76.9231 | 100.0000 | 95.9350 | 10 | 3 | 10 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.7005 | 97.9943 | 99.4169 | 85.1515 | 342 | 7 | 341 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | * | 96.1373 | 95.7265 | 96.5517 | 91.3883 | 112 | 5 | 112 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | het | 96.9231 | 98.4375 | 95.4545 | 92.5255 | 63 | 1 | 63 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 82.2917 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | homalt | 95.5224 | 94.1176 | 96.9697 | 91.0326 | 32 | 2 | 32 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l125_m1_e0 | * | 90.3226 | 93.3333 | 87.5000 | 94.3662 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 94.9239 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 94.2029 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | * | 96.6727 | 96.2651 | 97.0838 | 86.5742 | 799 | 31 | 799 | 24 | 6 | 25.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | het | 95.2424 | 94.6502 | 95.8420 | 88.2223 | 460 | 26 | 461 | 20 | 3 | 15.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 96.9697 | 94.1176 | 100.0000 | 92.8251 | 16 | 1 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | homalt | 98.7749 | 98.7768 | 98.7730 | 82.1174 | 323 | 4 | 322 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m1_e0 | * | 76.7370 | 72.2426 | 81.8276 | 90.5347 | 786 | 302 | 788 | 175 | 79 | 45.1429 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m1_e0 | het | 74.8992 | 68.5950 | 82.4793 | 92.0478 | 498 | 228 | 499 | 106 | 22 | 20.7547 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 7.6923 | 0.0000 | 0.0000 | 1 | 12 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l125_m1_e0 | homalt | 81.4736 | 82.2350 | 80.7263 | 86.0483 | 287 | 62 | 289 | 69 | 57 | 82.6087 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 66.6667 | 51.8519 | 93.3333 | 94.5652 | 14 | 13 | 14 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 92.8571 | 10 | 10 | 10 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.3235 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | * | map_l125_m1_e0 | * | 67.4524 | 62.0788 | 73.8444 | 90.3002 | 1308 | 799 | 1310 | 464 | 300 | 64.6552 | |
| ciseli-custom | INDEL | * | map_l125_m1_e0 | het | 68.7565 | 65.3184 | 72.5766 | 91.1620 | 872 | 463 | 876 | 331 | 196 | 59.2145 | |
| ciseli-custom | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 5.0000 | 0.0000 | 0.0000 | 2 | 38 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l125_m1_e0 | homalt | 66.8206 | 59.2896 | 76.5432 | 87.7564 | 434 | 298 | 434 | 133 | 104 | 78.1955 | |
| ciseli-custom | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | map_l125_m1_e0 | * | 97.0755 | 96.9422 | 97.2092 | 72.6876 | 28438 | 897 | 28423 | 816 | 227 | 27.8186 | |
| cchapple-custom | SNP | ti | map_l125_m1_e0 | het | 96.3594 | 97.1203 | 95.6103 | 76.7136 | 17740 | 526 | 17751 | 815 | 226 | 27.7301 | |
| cchapple-custom | SNP | ti | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 24 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l125_m1_e0 | homalt | 98.2873 | 96.6410 | 99.9906 | 60.9405 | 10674 | 371 | 10672 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | tv | map_l125_m1_e0 | * | 96.5512 | 97.3027 | 95.8113 | 74.0329 | 15584 | 432 | 15577 | 681 | 116 | 17.0338 | |
| cchapple-custom | SNP | tv | map_l125_m1_e0 | het | 95.5171 | 97.5509 | 93.5664 | 77.7177 | 9878 | 248 | 9904 | 681 | 116 | 17.0338 | |
| cchapple-custom | SNP | tv | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l125_m1_e0 | homalt | 98.4050 | 96.8601 | 100.0000 | 62.4454 | 5676 | 184 | 5673 | 0 | 0 | ||
| ciseli-custom | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||