PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60651-60700 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | * | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l125_m1_e0 | homalt | 98.3281 | 96.7169 | 99.9939 | 61.4654 | 16350 | 555 | 16345 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m1_e0 | * | 96.8476 | 96.5060 | 97.1917 | 84.9670 | 801 | 29 | 796 | 23 | 6 | 26.0870 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m1_e0 | het | 95.7437 | 95.6790 | 95.8084 | 86.4814 | 465 | 21 | 480 | 21 | 5 | 23.8095 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 94.1176 | 0.0000 | 0.0000 | 16 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l125_m1_e0 | homalt | 98.6094 | 97.8593 | 99.3711 | 81.7451 | 320 | 7 | 316 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 96.0784 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 94.8718 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 93.3333 | 93.3333 | 93.3333 | 97.1042 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 96.5517 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.5222 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 96.0274 | 98.7132 | 93.4839 | 90.1867 | 1074 | 14 | 1076 | 75 | 6 | 8.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 94.7425 | 99.0358 | 90.8060 | 91.1611 | 719 | 7 | 721 | 73 | 4 | 5.4795 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 96.9900 | 9 | 4 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.2826 | 99.1404 | 99.4253 | 85.7785 | 346 | 3 | 346 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 96.1702 | 96.5812 | 95.7627 | 92.6980 | 113 | 4 | 113 | 5 | 1 | 20.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 94.6565 | 96.8750 | 92.5373 | 94.2637 | 62 | 2 | 62 | 5 | 1 | 20.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 86.2595 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 89.5899 | 33 | 1 | 33 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 93.3333 | 92.4528 | 94.2308 | 93.2292 | 49 | 4 | 49 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 91.8033 | 93.3333 | 90.3226 | 93.9216 | 28 | 2 | 28 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 87.0370 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.1373 | 14 | 1 | 14 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m1_e0 | * | 84.2159 | 73.9471 | 97.7967 | 84.1626 | 33518 | 11809 | 33512 | 755 | 58 | 7.6821 | |
| ckim-gatk | SNP | * | map_l125_m1_e0 | het | 88.2494 | 81.0510 | 96.8511 | 86.4318 | 23012 | 5380 | 23006 | 748 | 54 | 7.2193 | |
| ckim-gatk | SNP | * | map_l125_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.3462 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m1_e0 | homalt | 76.5547 | 62.0408 | 99.9333 | 74.4573 | 10488 | 6417 | 10488 | 7 | 4 | 57.1429 | |
| ckim-gatk | SNP | ti | map_l125_m1_e0 | * | 84.6397 | 74.3855 | 98.1731 | 83.5274 | 21821 | 7514 | 21817 | 406 | 44 | 10.8374 | |
| ckim-gatk | SNP | ti | map_l125_m1_e0 | het | 88.7011 | 81.4464 | 97.3746 | 85.8996 | 14877 | 3389 | 14873 | 401 | 40 | 9.9751 | |
| ckim-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 88.3721 | 15 | 9 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l125_m1_e0 | homalt | 77.0788 | 62.7343 | 99.9279 | 73.7914 | 6929 | 4116 | 6929 | 5 | 4 | 80.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m1_e0 | * | 97.7394 | 98.7952 | 96.7059 | 89.6278 | 820 | 10 | 822 | 28 | 3 | 10.7143 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 96.5689 | 98.1481 | 95.0397 | 91.4793 | 477 | 9 | 479 | 25 | 1 | 4.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0612 | 17 | 0 | 17 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.3902 | 99.6942 | 99.0881 | 83.8329 | 326 | 1 | 326 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | * | 94.7368 | 100.0000 | 90.0000 | 97.2196 | 27 | 0 | 27 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.2381 | 100.0000 | 90.9091 | 97.3526 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.6415 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||