PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60601-60650 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m1_e0 | * | 90.3226 | 93.3333 | 87.5000 | 95.8115 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 94.7917 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.0000 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.6471 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m1_e0 | * | 89.7959 | 83.0189 | 97.7778 | 90.5263 | 44 | 9 | 44 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m1_e0 | het | 85.1852 | 76.6667 | 95.8333 | 91.0448 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.5246 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 90.4110 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l125_m1_e0 | * | 99.4583 | 99.2389 | 99.6786 | 68.9911 | 44982 | 345 | 44976 | 145 | 41 | 28.2759 | |
| hfeng-pmm1 | SNP | * | map_l125_m1_e0 | het | 99.2507 | 98.9117 | 99.5921 | 70.2654 | 28083 | 309 | 28077 | 115 | 29 | 25.2174 | |
| hfeng-pmm1 | SNP | * | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.6119 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l125_m1_e0 | homalt | 99.8048 | 99.7870 | 99.8225 | 66.5790 | 16869 | 36 | 16869 | 30 | 12 | 40.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.6079 | 98.0723 | 99.1495 | 84.7395 | 814 | 16 | 816 | 7 | 2 | 28.5714 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | het | 97.9184 | 96.7078 | 99.1597 | 85.5451 | 470 | 16 | 472 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.2540 | 17 | 0 | 17 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 82.1429 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | SNP | ti | map_l125_m1_e0 | * | 99.4515 | 99.2091 | 99.6951 | 68.8149 | 29103 | 232 | 29099 | 89 | 25 | 28.0899 | |
| hfeng-pmm1 | SNP | ti | map_l125_m1_e0 | het | 99.2306 | 98.8613 | 99.6028 | 70.2477 | 18058 | 208 | 18054 | 72 | 18 | 25.0000 | |
| hfeng-pmm1 | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.0843 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l125_m1_e0 | homalt | 99.8143 | 99.7827 | 99.8460 | 66.1307 | 11021 | 24 | 11021 | 17 | 7 | 41.1765 | |
| hfeng-pmm1 | SNP | tv | map_l125_m1_e0 | * | 99.4714 | 99.2945 | 99.6491 | 69.3117 | 15903 | 113 | 15901 | 56 | 16 | 28.5714 | |
| hfeng-pmm1 | SNP | tv | map_l125_m1_e0 | het | 99.2869 | 99.0026 | 99.5728 | 70.2971 | 10025 | 101 | 10023 | 43 | 11 | 25.5814 | |
| hfeng-pmm1 | SNP | tv | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.6119 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l125_m1_e0 | homalt | 99.7867 | 99.7952 | 99.7782 | 67.3918 | 5848 | 12 | 5848 | 13 | 5 | 38.4615 | |
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | * | 98.2517 | 98.5762 | 97.9294 | 87.1694 | 2077 | 30 | 2081 | 44 | 7 | 15.9091 | |
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | het | 97.7323 | 98.2772 | 97.1935 | 88.0494 | 1312 | 23 | 1316 | 38 | 3 | 7.8947 | |
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | hetalt | 96.1039 | 92.5000 | 100.0000 | 93.0057 | 37 | 3 | 37 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | homalt | 99.3179 | 99.4536 | 99.1826 | 84.3929 | 728 | 4 | 728 | 6 | 4 | 66.6667 | |
| cchapple-custom | INDEL | I16_PLUS | map_l125_m1_e0 | * | 96.9697 | 100.0000 | 94.1176 | 95.6633 | 15 | 0 | 16 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l125_m1_e0 | het | 96.2963 | 100.0000 | 92.8571 | 94.4664 | 9 | 0 | 13 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.8417 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 91.2281 | 96.2963 | 86.6667 | 94.5055 | 26 | 1 | 26 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 89.5075 | 95.0000 | 84.6154 | 94.1704 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 4 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l125_m1_e0 | * | 96.1525 | 97.2426 | 95.0864 | 84.7784 | 1058 | 30 | 1045 | 54 | 6 | 11.1111 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m1_e0 | het | 95.2376 | 97.3829 | 93.1848 | 85.5574 | 707 | 19 | 711 | 52 | 4 | 7.6923 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 13 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.1098 | 96.8481 | 99.4048 | 82.6536 | 338 | 11 | 334 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m1_e0 | * | 93.7322 | 93.1624 | 94.3089 | 88.0234 | 109 | 8 | 116 | 7 | 3 | 42.8571 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 94.3499 | 95.3125 | 93.4066 | 88.7237 | 61 | 3 | 85 | 6 | 2 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l125_m1_e0 | homalt | 93.9394 | 91.1765 | 96.8750 | 85.4545 | 31 | 3 | 31 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 92.1176 | 88.6792 | 95.8333 | 91.2727 | 47 | 6 | 46 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m1_e0 | het | 88.3191 | 83.3333 | 93.9394 | 91.8919 | 25 | 5 | 31 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 7 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 89.5105 | 15 | 0 | 15 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l125_m1_e0 | * | 96.8884 | 97.0680 | 96.7095 | 73.1758 | 43998 | 1329 | 43998 | 1497 | 343 | 22.9125 | |
| cchapple-custom | SNP | * | map_l125_m1_e0 | het | 96.0557 | 97.2739 | 94.8677 | 77.0814 | 27618 | 774 | 27653 | 1496 | 342 | 22.8610 | |