PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60501-60550 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | * | 94.5107 | 95.4217 | 93.6170 | 89.0315 | 792 | 38 | 792 | 54 | 19 | 35.1852 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | het | 94.1757 | 98.1481 | 90.5123 | 91.5531 | 477 | 9 | 477 | 50 | 17 | 34.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 17 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.5232 | 96.3303 | 98.7461 | 78.3582 | 315 | 12 | 315 | 4 | 2 | 50.0000 | |
| gduggal-snapplat | SNP | ti | map_l125_m1_e0 | * | 94.1774 | 92.2277 | 96.2113 | 79.7747 | 27055 | 2280 | 27070 | 1066 | 586 | 54.9719 | |
| gduggal-snapplat | SNP | ti | map_l125_m1_e0 | het | 93.9862 | 93.7479 | 94.2256 | 83.3757 | 17124 | 1142 | 17150 | 1051 | 571 | 54.3292 | |
| gduggal-snapplat | SNP | ti | map_l125_m1_e0 | hetalt | 84.6154 | 91.6667 | 78.5714 | 78.4615 | 22 | 2 | 22 | 6 | 6 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l125_m1_e0 | homalt | 94.5380 | 89.7148 | 99.9092 | 66.4158 | 9909 | 1136 | 9898 | 9 | 9 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | * | 9.3750 | 5.6604 | 27.2727 | 96.1806 | 3 | 50 | 3 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | het | 10.2564 | 6.6667 | 22.2222 | 94.8864 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 8 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.2222 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | * | map_l125_m1_e0 | * | 93.8560 | 91.8106 | 95.9947 | 80.5503 | 41615 | 3712 | 41630 | 1737 | 931 | 53.5982 | |
| gduggal-snapplat | SNP | * | map_l125_m1_e0 | het | 93.6975 | 93.4770 | 93.9190 | 83.9811 | 26540 | 1852 | 26565 | 1720 | 915 | 53.1977 | |
| gduggal-snapplat | SNP | * | map_l125_m1_e0 | hetalt | 80.6452 | 83.3333 | 78.1250 | 84.4660 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m1_e0 | homalt | 94.1655 | 89.0269 | 99.9336 | 67.4179 | 15050 | 1855 | 15040 | 10 | 9 | 90.0000 | |
| gduggal-snapplat | SNP | tv | map_l125_m1_e0 | * | 93.2502 | 91.0465 | 95.5633 | 81.8317 | 14582 | 1434 | 14582 | 677 | 351 | 51.8464 | |
| gduggal-snapplat | SNP | tv | map_l125_m1_e0 | het | 93.1767 | 92.9883 | 93.3657 | 84.9692 | 9416 | 710 | 9415 | 669 | 344 | 51.4200 | |
| gduggal-snapplat | SNP | tv | map_l125_m1_e0 | hetalt | 80.6452 | 83.3333 | 78.1250 | 84.4660 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l125_m1_e0 | homalt | 93.4557 | 87.7304 | 99.9806 | 69.1888 | 5141 | 719 | 5142 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m1_e0 | * | 84.1534 | 79.1566 | 89.8236 | 93.4173 | 657 | 173 | 662 | 75 | 4 | 5.3333 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m1_e0 | het | 82.7206 | 79.2181 | 86.5471 | 94.3473 | 385 | 101 | 386 | 60 | 3 | 5.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 49.5868 | 35.2941 | 83.3333 | 98.9455 | 6 | 11 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m1_e0 | homalt | 87.6815 | 81.3456 | 95.0877 | 89.5871 | 266 | 61 | 271 | 14 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | * | 85.8371 | 91.9791 | 80.4640 | 88.3383 | 1938 | 169 | 2636 | 640 | 251 | 39.2188 | |
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | het | 83.6174 | 95.9551 | 74.0909 | 89.7946 | 1281 | 54 | 1793 | 627 | 240 | 38.2775 | |
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 20 | 20 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | homalt | 92.3976 | 87.0219 | 98.4813 | 80.4522 | 637 | 95 | 843 | 13 | 11 | 84.6154 | |
| gduggal-snapvard | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 92.3077 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.0946 | 96.9669 | 99.2488 | 83.4909 | 1055 | 33 | 1057 | 8 | 1 | 12.5000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m1_e0 | het | 97.4839 | 96.0055 | 99.0085 | 82.7426 | 697 | 29 | 699 | 7 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.8042 | 12 | 1 | 12 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.4253 | 99.1404 | 99.7118 | 83.2690 | 346 | 3 | 346 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l125_m1_e0 | * | 97.9886 | 97.0574 | 98.9377 | 85.1509 | 2045 | 62 | 2049 | 22 | 4 | 18.1818 | |
| hfeng-pmm1 | INDEL | * | map_l125_m1_e0 | het | 97.3032 | 95.8801 | 98.7692 | 85.2424 | 1280 | 55 | 1284 | 16 | 1 | 6.2500 | |