PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60451-60500 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | * | 87.8220 | 95.5882 | 81.2230 | 87.7784 | 1040 | 48 | 1315 | 304 | 98 | 32.2368 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | het | 85.4186 | 98.2094 | 75.5757 | 89.1583 | 713 | 13 | 919 | 297 | 91 | 30.6397 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 69.2308 | 0.0000 | 0.0000 | 9 | 4 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | homalt | 94.5554 | 91.1175 | 98.2630 | 80.1576 | 318 | 31 | 396 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 98.7755 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 98.6301 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D6_15 | map_l125_m1_e0 | * | 71.3819 | 70.0855 | 72.7273 | 85.2349 | 82 | 35 | 128 | 48 | 32 | 66.6667 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m1_e0 | het | 77.8579 | 87.5000 | 70.1299 | 85.8326 | 56 | 8 | 108 | 46 | 30 | 65.2174 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 57.8947 | 0.0000 | 0.0000 | 11 | 8 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l125_m1_e0 | homalt | 59.4059 | 44.1176 | 90.9091 | 79.0476 | 15 | 19 | 20 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m1_e0 | * | 22.9885 | 13.3333 | 83.3333 | 78.5714 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m1_e0 | het | 35.0877 | 22.2222 | 83.3333 | 78.0488 | 2 | 7 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I1_5 | map_l125_m1_e0 | * | 90.5689 | 94.8193 | 86.6832 | 88.0250 | 787 | 43 | 1048 | 161 | 65 | 40.3727 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m1_e0 | het | 88.6113 | 98.7654 | 80.3504 | 90.3081 | 480 | 6 | 642 | 157 | 63 | 40.1274 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 41.1765 | 0.0000 | 0.0000 | 7 | 10 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l125_m1_e0 | homalt | 95.2448 | 91.7431 | 99.0244 | 77.8618 | 300 | 27 | 406 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | SNP | ti | map_l125_m1_e0 | * | 98.1866 | 98.6569 | 97.7208 | 74.6512 | 28941 | 394 | 28941 | 675 | 158 | 23.4074 | |
| ghariani-varprowl | SNP | ti | map_l125_m1_e0 | het | 97.6469 | 98.8229 | 96.4984 | 77.7923 | 18051 | 215 | 18051 | 655 | 143 | 21.8321 | |
| ghariani-varprowl | SNP | ti | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 24 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l125_m1_e0 | homalt | 99.2029 | 98.5967 | 99.8167 | 66.5358 | 10890 | 155 | 10890 | 20 | 15 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | * | 59.2593 | 53.3333 | 66.6667 | 87.5000 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | het | 76.1905 | 88.8889 | 66.6667 | 85.8824 | 8 | 1 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | * | 81.4815 | 81.4815 | 81.4815 | 98.2330 | 22 | 5 | 22 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | het | 86.3636 | 95.0000 | 79.1667 | 97.6471 | 19 | 1 | 19 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4094 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l125_m1_e0 | * | 70.7071 | 66.0377 | 76.0870 | 91.4019 | 35 | 18 | 35 | 11 | 7 | 63.6364 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m1_e0 | het | 75.0000 | 80.0000 | 70.5882 | 92.6407 | 24 | 6 | 24 | 10 | 6 | 60.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | map_l125_m1_e0 | homalt | 81.4815 | 73.3333 | 91.6667 | 83.5616 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | SNP | * | map_l125_m1_e0 | * | 97.9382 | 98.7204 | 97.1684 | 75.3206 | 44747 | 580 | 44747 | 1304 | 273 | 20.9356 | |
| ghariani-varprowl | SNP | * | map_l125_m1_e0 | het | 97.3202 | 98.9398 | 95.7528 | 78.2919 | 28091 | 301 | 28091 | 1246 | 234 | 18.7801 | |
| ghariani-varprowl | SNP | * | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l125_m1_e0 | homalt | 99.0868 | 98.5271 | 99.6530 | 67.5166 | 16656 | 249 | 16656 | 58 | 39 | 67.2414 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m1_e0 | * | 78.4141 | 76.0684 | 80.9091 | 92.1090 | 89 | 28 | 89 | 21 | 19 | 90.4762 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m1_e0 | het | 84.3537 | 96.8750 | 74.6988 | 93.2134 | 62 | 2 | 62 | 21 | 19 | 90.4762 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D6_15 | map_l125_m1_e0 | homalt | 88.5246 | 79.4118 | 100.0000 | 84.2105 | 27 | 7 | 27 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | * | 91.7326 | 95.8640 | 87.9427 | 88.9869 | 1043 | 45 | 1043 | 143 | 27 | 18.8811 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | het | 90.8745 | 98.7603 | 84.1549 | 90.4911 | 717 | 9 | 717 | 135 | 26 | 19.2593 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | homalt | 95.4612 | 93.4097 | 97.6048 | 81.5368 | 326 | 23 | 326 | 8 | 1 | 12.5000 | |