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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 117 118 119 120 121 122 123 124 125 ... 1720 1721 » 6001-6050 / 86044 show all
jlack-gatk	SNP	tv	HG002complexvar	*	99.9000	99.8932	99.9069	22.4572	245889	263	245795	229	81	35.3712
jlack-gatk	SNP	tv	HG002complexvar	het	99.8776	99.8932	99.8620	22.3009	150570	161	150494	208	64	30.7692
jlack-gatk	SNP	tv	HG002complexvar	hetalt	99.0323	99.0323	99.0323	39.5712	307	3	307	3	3	100.0000
jlack-gatk	SNP	tv	HG002complexvar	homalt	99.9385	99.8959	99.9811	22.6324	95012	99	94994	18	14	77.7778
jli-custom	INDEL	*	HG002complexvar	*	99.2454	98.7574	99.7382	56.8994	75982	956	75827	199	151	75.8794
jli-custom	INDEL	*	HG002complexvar	het	99.4410	99.0457	99.8394	56.1111	45771	441	45384	73	32	43.8356
jli-custom	INDEL	*	HG002complexvar	hetalt	92.1678	86.8343	98.1995	67.3509	3212	487	3436	63	62	98.4127
jli-custom	INDEL	*	HG002complexvar	homalt	99.8318	99.8964	99.7673	56.4104	26999	28	27007	63	57	90.4762
jli-custom	INDEL	C16_PLUS	HG002complexvar	*		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C16_PLUS	HG002complexvar	het		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C16_PLUS	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C16_PLUS	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	SNP	ti	HG002complexvar	*	99.9170	99.8944	99.9396	17.8349	507899	537	507834	307	122	39.7394
jlack-gatk	SNP	ti	HG002complexvar	het	99.8980	99.8818	99.9142	17.5660	314394	372	314340	270	88	32.5926
jlack-gatk	SNP	ti	HG002complexvar	hetalt	98.7893	98.5507	99.0291	39.5894	204	3	204	2	2	100.0000
jlack-gatk	SNP	ti	HG002complexvar	homalt	99.9491	99.9163	99.9819	18.2375	193301	162	193290	35	32	91.4286
jlack-gatk	INDEL	I16_PLUS	HG002complexvar	*	97.1912	96.4859	97.9070	66.9992	1263	46	1263	27	23	85.1852
jlack-gatk	INDEL	I16_PLUS	HG002complexvar	het	98.7797	98.0451	99.5253	64.0909	652	13	629	3	1	33.3333
jlack-gatk	INDEL	I16_PLUS	HG002complexvar	hetalt	94.5436	90.1493	99.3884	68.8275	302	33	325	2	1	50.0000
jlack-gatk	INDEL	I16_PLUS	HG002complexvar	homalt	96.5625	100.0000	93.3535	69.9091	309	0	309	22	21	95.4545
jlack-gatk	INDEL	I6_15	HG002complexvar	*	97.6141	96.8698	98.3700	57.6968	4642	150	4647	77	75	97.4026
jlack-gatk	INDEL	I6_15	HG002complexvar	het	98.9714	98.3439	99.6068	59.5940	2316	39	2280	9	8	88.8889
jlack-gatk	INDEL	I6_15	HG002complexvar	hetalt	95.3861	91.2510	99.9136	55.5641	1116	107	1157	1	1	100.0000
jlack-gatk	INDEL	I6_15	HG002complexvar	homalt	97.1497	99.6705	94.7533	55.9047	1210	4	1210	67	66	98.5075
jlack-gatk	SNP	*	HG002complexvar	*	99.9118	99.8944	99.9292	19.3948	753584	797	753425	534	201	37.6404
jlack-gatk	SNP	*	HG002complexvar	het	99.8914	99.8855	99.8973	19.1615	464964	533	464834	478	152	31.7992
jlack-gatk	SNP	*	HG002complexvar	hetalt	99.0323	99.0323	99.0323	39.5712	307	3	307	3	3	100.0000
jlack-gatk	SNP	*	HG002complexvar	homalt	99.9456	99.9096	99.9816	19.7398	288313	261	288284	53	46	86.7925
jli-custom	INDEL	C6_15	HG002complexvar	*	0.0000	100.0000	0.0000	0.0000	4	0	0	0	0
jli-custom	INDEL	C6_15	HG002complexvar	het	0.0000	100.0000	0.0000	0.0000	4	0	0	0	0
jli-custom	INDEL	C6_15	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C6_15	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	I16_PLUS	HG002complexvar	*	95.8482	92.5898	99.3443	64.3692	1212	97	1212	8	4	50.0000
jli-custom	INDEL	I16_PLUS	HG002complexvar	het	94.3784	89.7744	99.4801	60.9343	597	68	574	3	0	0.0000
jli-custom	INDEL	I16_PLUS	HG002complexvar	hetalt	95.8474	92.5373	99.4030	66.7988	310	25	333	2	2	100.0000
jli-custom	INDEL	I16_PLUS	HG002complexvar	homalt	98.8655	98.7055	99.0260	67.1642	305	4	305	3	2	66.6667
jli-custom	INDEL	I1_5	HG002complexvar	*	99.4264	98.9689	99.8882	55.8919	33019	344	33052	37	27	72.9730
jli-custom	INDEL	I1_5	HG002complexvar	het	99.6665	99.4282	99.9059	56.5291	18085	104	18053	17	9	52.9412
jli-custom	INDEL	I1_5	HG002complexvar	hetalt	92.7842	86.7323	99.7439	70.2420	1497	229	1558	4	4	100.0000
jli-custom	INDEL	I1_5	HG002complexvar	homalt	99.8996	99.9182	99.8811	52.2818	13437	11	13441	16	14	87.5000
jli-custom	INDEL	I6_15	HG002complexvar	*	98.1083	96.8489	99.4008	55.2909	4641	151	4645	28	23	82.1429
jli-custom	INDEL	I6_15	HG002complexvar	het	98.4497	97.1975	99.7346	57.2913	2289	66	2255	6	1	16.6667
jli-custom	INDEL	I6_15	HG002complexvar	hetalt	96.4875	93.2134	100.0000	52.5574	1140	83	1178	0	0
jli-custom	INDEL	I6_15	HG002complexvar	homalt	99.0196	99.8353	98.2172	53.8692	1212	2	1212	22	22	100.0000
jli-custom	INDEL	D6_15	HG002complexvar	*	98.1282	97.3972	98.8702	56.5015	5164	138	5163	59	53	89.8305
jli-custom	INDEL	D6_15	HG002complexvar	het	98.7528	98.0128	99.5040	56.9844	3058	62	3009	15	10	66.6667
jli-custom	INDEL	D6_15	HG002complexvar	hetalt	94.3987	92.4975	96.3796	46.9642	937	76	985	37	36	97.2973
jli-custom	INDEL	D6_15	HG002complexvar	homalt	99.7015	100.0000	99.4048	61.4173	1169	0	1169	7	7	100.0000
jli-custom	INDEL	C1_5	HG002complexvar	*	0.0000	57.1429	0.0000	0.0000	4	3	0	0	0
jli-custom	INDEL	C1_5	HG002complexvar	het	0.0000	57.1429	0.0000	0.0000	4	3	0	0	0

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