PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60351-60400 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.4539 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 89.6552 | 86.6667 | 92.8571 | 97.3231 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 96.7638 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.4762 | 2 | 1 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.9637 | 2 | 1 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 88.0734 | 90.5660 | 85.7143 | 92.6606 | 48 | 5 | 48 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 83.8710 | 86.6667 | 81.2500 | 93.6759 | 26 | 4 | 26 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.2308 | 7 | 1 | 7 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l125_m1_e0 | homalt | 93.7500 | 100.0000 | 88.2353 | 91.1458 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| jlack-gatk | SNP | * | map_l125_m1_e0 | * | 96.1255 | 98.8638 | 93.5349 | 78.9418 | 44812 | 515 | 44806 | 3097 | 238 | 7.6849 | |
| jlack-gatk | SNP | * | map_l125_m1_e0 | het | 94.3869 | 99.0455 | 90.1469 | 82.7150 | 28121 | 271 | 28115 | 3073 | 220 | 7.1591 | |
| jlack-gatk | SNP | * | map_l125_m1_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 86.7257 | 28 | 2 | 28 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l125_m1_e0 | homalt | 99.2141 | 98.5685 | 99.8681 | 64.3628 | 16663 | 242 | 16663 | 22 | 16 | 72.7273 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m1_e0 | * | 96.5825 | 98.5542 | 94.6882 | 89.3152 | 818 | 12 | 820 | 46 | 4 | 8.6957 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 94.8373 | 97.9424 | 91.9231 | 91.0821 | 476 | 10 | 478 | 42 | 2 | 4.7619 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1781 | 17 | 0 | 17 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.0854 | 99.3884 | 98.7842 | 83.4006 | 325 | 2 | 325 | 4 | 2 | 50.0000 | |
| jlack-gatk | SNP | ti | map_l125_m1_e0 | * | 96.7083 | 98.8614 | 94.6470 | 78.3386 | 29001 | 334 | 28997 | 1640 | 151 | 9.2073 | |
| jlack-gatk | SNP | ti | map_l125_m1_e0 | het | 95.2550 | 99.0419 | 91.7470 | 82.2690 | 18091 | 175 | 18087 | 1627 | 140 | 8.6048 | |
| jlack-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 93.8776 | 95.8333 | 92.0000 | 82.1429 | 23 | 1 | 23 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l125_m1_e0 | homalt | 99.2298 | 98.5695 | 99.8991 | 63.8084 | 10887 | 158 | 10887 | 11 | 9 | 81.8182 | |
| jli-custom | INDEL | * | map_l125_m1_e0 | * | 98.5968 | 98.3389 | 98.8561 | 85.7695 | 2072 | 35 | 2074 | 24 | 8 | 33.3333 | |
| jli-custom | INDEL | * | map_l125_m1_e0 | het | 98.3481 | 98.0524 | 98.6456 | 86.0194 | 1309 | 26 | 1311 | 18 | 4 | 22.2222 | |
| jli-custom | INDEL | * | map_l125_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 92.6078 | 36 | 4 | 36 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l125_m1_e0 | homalt | 99.2491 | 99.3169 | 99.1814 | 84.5684 | 727 | 5 | 727 | 6 | 4 | 66.6667 | |
| jlack-gatk | SNP | tv | map_l125_m1_e0 | * | 95.0729 | 98.8636 | 91.5621 | 79.9369 | 15834 | 182 | 15832 | 1459 | 89 | 6.1001 | |
| jlack-gatk | SNP | tv | map_l125_m1_e0 | het | 92.8605 | 99.0519 | 87.3976 | 83.4310 | 10030 | 96 | 10028 | 1446 | 80 | 5.5325 | |
| jlack-gatk | SNP | tv | map_l125_m1_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 86.7257 | 28 | 2 | 28 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l125_m1_e0 | homalt | 99.1843 | 98.5666 | 99.8099 | 65.3618 | 5776 | 84 | 5776 | 11 | 7 | 63.6364 | |
| jmaeng-gatk | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | * | 96.4286 | 100.0000 | 93.1034 | 97.1173 | 27 | 0 | 27 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.2381 | 100.0000 | 90.9091 | 97.1831 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.1053 | 3 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.8610 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l125_m1_e0 | * | 99.3574 | 99.1001 | 99.6162 | 66.6526 | 29071 | 264 | 29069 | 112 | 41 | 36.6071 | |
| jli-custom | SNP | ti | map_l125_m1_e0 | het | 99.1158 | 98.8065 | 99.4270 | 68.8246 | 18048 | 218 | 18046 | 104 | 33 | 31.7308 | |
| jli-custom | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.5676 | 24 | 0 | 24 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l125_m1_e0 | homalt | 99.7551 | 99.5835 | 99.9273 | 62.3216 | 10999 | 46 | 10999 | 8 | 8 | 100.0000 | |
| jli-custom | SNP | tv | map_l125_m1_e0 | * | 99.2462 | 99.0572 | 99.4359 | 66.9313 | 15865 | 151 | 15864 | 90 | 26 | 28.8889 | |
| jli-custom | SNP | tv | map_l125_m1_e0 | het | 98.9659 | 98.7656 | 99.1670 | 68.7560 | 10001 | 125 | 10000 | 84 | 21 | 25.0000 | |
| jli-custom | SNP | tv | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.1379 | 30 | 0 | 30 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l125_m1_e0 | homalt | 99.7265 | 99.5563 | 99.8973 | 63.1639 | 5834 | 26 | 5834 | 6 | 5 | 83.3333 | |
| jmaeng-gatk | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||