PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60051-60100 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | * | map_l125_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 94.2797 | 32 | 8 | 27 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l125_m1_e0 | homalt | 98.9761 | 99.0437 | 98.9086 | 84.6202 | 725 | 7 | 725 | 8 | 6 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m1_e0 | * | 66.7171 | 53.1325 | 89.6341 | 77.6871 | 441 | 389 | 441 | 51 | 46 | 90.1961 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m1_e0 | het | 63.4349 | 47.1193 | 97.0339 | 78.6038 | 229 | 257 | 229 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 78.5714 | 64.7059 | 100.0000 | 88.1720 | 11 | 6 | 11 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l125_m1_e0 | homalt | 70.2797 | 61.4679 | 82.0408 | 75.7185 | 201 | 126 | 201 | 44 | 42 | 95.4545 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m1_e0 | * | 71.1252 | 62.2642 | 82.9268 | 83.4677 | 33 | 20 | 34 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m1_e0 | het | 73.2883 | 63.3333 | 86.9565 | 81.4516 | 19 | 11 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 76.9231 | 6 | 2 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l125_m1_e0 | homalt | 59.2593 | 53.3333 | 66.6667 | 87.7551 | 8 | 7 | 8 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.1667 | 0 | 0 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.2683 | 0 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.2143 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 53.2117 | 92.5926 | 37.3333 | 95.7069 | 25 | 2 | 28 | 47 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 54.1353 | 90.0000 | 38.7097 | 94.2056 | 18 | 2 | 24 | 38 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 47.0588 | 100.0000 | 30.7692 | 98.0798 | 4 | 0 | 4 | 9 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m1_e0 | * | 86.3838 | 78.0331 | 96.7359 | 91.0029 | 849 | 239 | 978 | 33 | 27 | 81.8182 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m1_e0 | het | 86.5537 | 78.7879 | 96.0177 | 92.5772 | 572 | 154 | 651 | 27 | 21 | 77.7778 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 96.9697 | 9 | 4 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l125_m1_e0 | homalt | 86.1830 | 76.7908 | 98.1928 | 83.9614 | 268 | 81 | 326 | 6 | 6 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l125_m1_e0 | * | 99.1869 | 98.5512 | 99.8308 | 67.6959 | 28910 | 425 | 28910 | 49 | 27 | 55.1020 | |
| ndellapenna-hhga | SNP | ti | map_l125_m1_e0 | het | 98.8592 | 97.9689 | 99.7658 | 69.2090 | 17895 | 371 | 17895 | 42 | 20 | 47.6190 | |
| ndellapenna-hhga | SNP | ti | map_l125_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 75.9036 | 20 | 4 | 20 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l125_m1_e0 | homalt | 99.7415 | 99.5473 | 99.9364 | 64.8588 | 10995 | 50 | 10995 | 7 | 7 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | * | 99.1238 | 98.5327 | 99.7220 | 67.2834 | 15781 | 235 | 15781 | 44 | 22 | 50.0000 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | het | 98.8001 | 97.9854 | 99.6285 | 68.0340 | 9922 | 204 | 9922 | 37 | 16 | 43.2432 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 79.1667 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | homalt | 99.7180 | 99.5563 | 99.8802 | 65.8321 | 5834 | 26 | 5834 | 7 | 6 | 85.7143 | |
| qzeng-custom | INDEL | * | map_l125_m1_e0 | * | 82.7094 | 73.9440 | 93.8324 | 91.4171 | 1558 | 549 | 1993 | 131 | 45 | 34.3511 | |
| qzeng-custom | INDEL | * | map_l125_m1_e0 | het | 82.2615 | 74.0824 | 92.4708 | 92.9115 | 989 | 346 | 1265 | 103 | 35 | 33.9806 | |
| qzeng-custom | INDEL | * | map_l125_m1_e0 | hetalt | 87.3239 | 77.5000 | 100.0000 | 92.6941 | 31 | 9 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l125_m1_e0 | homalt | 83.3361 | 73.4973 | 96.2162 | 85.8482 | 538 | 194 | 712 | 28 | 10 | 35.7143 | |
| qzeng-custom | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 87.3239 | 0 | 0 | 0 | 9 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 83.7209 | 0 | 0 | 0 | 7 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 92.8571 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m1_e0 | * | 98.0672 | 97.7108 | 98.4262 | 83.5622 | 811 | 19 | 813 | 13 | 1 | 7.6923 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m1_e0 | het | 97.4247 | 97.1193 | 97.7320 | 84.0145 | 472 | 14 | 474 | 11 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 96.9697 | 94.1176 | 100.0000 | 91.8367 | 16 | 1 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.0798 | 98.7768 | 99.3846 | 81.8942 | 323 | 4 | 323 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | * | 88.8889 | 83.0189 | 95.6522 | 88.3838 | 44 | 9 | 44 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | het | 88.8889 | 80.0000 | 100.0000 | 88.6792 | 24 | 6 | 24 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 78.7879 | 7 | 1 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | homalt | 86.6667 | 86.6667 | 86.6667 | 90.0662 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |