PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
551-600 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | I16_PLUS | * | hetalt | 96.2521 | 92.9933 | 99.7475 | 58.1926 | 1951 | 147 | 1975 | 5 | 5 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | * | homalt | 97.7415 | 99.8078 | 95.7591 | 72.2497 | 1558 | 3 | 1558 | 69 | 66 | 95.6522 | |
| dgrover-gatk | INDEL | I1_5 | * | * | 99.5294 | 99.3841 | 99.6753 | 59.0782 | 149736 | 928 | 149786 | 488 | 385 | 78.8934 | |
| dgrover-gatk | INDEL | I1_5 | * | het | 99.6919 | 99.6799 | 99.7038 | 61.0342 | 78788 | 253 | 78770 | 234 | 135 | 57.6923 | |
| dgrover-gatk | INDEL | I1_5 | * | hetalt | 97.2805 | 94.7387 | 99.9625 | 62.4322 | 10606 | 589 | 10669 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | * | homalt | 99.7224 | 99.8577 | 99.5874 | 55.4630 | 60342 | 86 | 60347 | 250 | 246 | 98.4000 | |
| dgrover-gatk | INDEL | I6_15 | * | * | 97.9082 | 97.2888 | 98.5355 | 53.2809 | 24150 | 673 | 24155 | 359 | 329 | 91.6435 | |
| dgrover-gatk | INDEL | I6_15 | * | het | 99.0704 | 98.9435 | 99.1977 | 59.7099 | 9927 | 106 | 9891 | 80 | 53 | 66.2500 | |
| dgrover-gatk | INDEL | I6_15 | * | hetalt | 96.6039 | 93.4744 | 99.9502 | 38.7907 | 7993 | 558 | 8034 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | * | homalt | 97.7715 | 99.8557 | 95.7725 | 55.4177 | 6230 | 9 | 6230 | 275 | 272 | 98.9091 | |
| dgrover-gatk | SNP | * | * | * | 99.9456 | 99.9631 | 99.9282 | 19.2565 | 3053492 | 1127 | 3053343 | 2195 | 207 | 9.4305 | |
| dgrover-gatk | SNP | * | * | het | 99.9216 | 99.9564 | 99.8868 | 20.4479 | 1872770 | 817 | 1872645 | 2122 | 144 | 6.7861 | |
| dgrover-gatk | SNP | * | * | hetalt | 99.8275 | 99.6556 | 100.0000 | 41.6667 | 868 | 3 | 868 | 0 | 0 | ||
| dgrover-gatk | SNP | * | * | homalt | 99.9839 | 99.9740 | 99.9938 | 17.2643 | 1179854 | 307 | 1179830 | 73 | 63 | 86.3014 | |
| dgrover-gatk | SNP | ti | * | * | 99.9570 | 99.9639 | 99.9500 | 17.7617 | 2084759 | 752 | 2084696 | 1042 | 126 | 12.0921 | |
| dgrover-gatk | SNP | ti | * | het | 99.9394 | 99.9568 | 99.9221 | 18.8587 | 1281337 | 554 | 1281283 | 999 | 87 | 8.7087 | |
| dgrover-gatk | SNP | ti | * | hetalt | 99.8279 | 99.6564 | 100.0000 | 41.2361 | 580 | 2 | 580 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | * | homalt | 99.9851 | 99.9756 | 99.9946 | 15.9219 | 802842 | 196 | 802833 | 43 | 39 | 90.6977 | |
| dgrover-gatk | SNP | tv | * | * | 99.9211 | 99.9611 | 99.8812 | 22.3092 | 969313 | 377 | 969227 | 1153 | 81 | 7.0252 | |
| dgrover-gatk | SNP | tv | * | het | 99.8830 | 99.9556 | 99.8105 | 23.6829 | 591433 | 263 | 591362 | 1123 | 57 | 5.0757 | |
| dgrover-gatk | SNP | tv | * | hetalt | 99.8275 | 99.6556 | 100.0000 | 41.6667 | 868 | 3 | 868 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | * | homalt | 99.9813 | 99.9706 | 99.9920 | 19.9848 | 377012 | 111 | 376997 | 30 | 24 | 80.0000 | |
| egarrison-hhga | INDEL | * | * | * | 97.4253 | 97.1646 | 97.6874 | 75.7607 | 334773 | 9769 | 335276 | 7937 | 6682 | 84.1880 | |
| egarrison-hhga | INDEL | * | * | het | 97.8735 | 98.9564 | 96.8141 | 57.0135 | 192107 | 2026 | 193181 | 6357 | 5653 | 88.9256 | |
| egarrison-hhga | INDEL | * | * | hetalt | 84.7197 | 74.1293 | 98.8404 | 62.3270 | 18708 | 6529 | 18156 | 213 | 191 | 89.6714 | |
| egarrison-hhga | INDEL | * | * | homalt | 98.9696 | 99.0301 | 98.9091 | 55.3233 | 123958 | 1214 | 123939 | 1367 | 838 | 61.3021 | |
| egarrison-hhga | INDEL | C16_PLUS | * | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | * | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | * | * | 40.0000 | 100.0000 | 4 | 6 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | * | het | 33.3333 | 100.0000 | 3 | 6 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | * | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | * | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C6_15 | * | * | 20.0000 | 14.2857 | 33.3333 | 95.4887 | 1 | 6 | 2 | 4 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | C6_15 | * | het | 16.6667 | 14.2857 | 20.0000 | 78.2609 | 1 | 6 | 1 | 4 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | C6_15 | * | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 100.0000 | 97.1429 | 0 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | * | * | 85.6324 | 79.0831 | 93.3644 | 63.5644 | 5365 | 1419 | 5417 | 385 | 330 | 85.7143 | |
| egarrison-hhga | INDEL | D16_PLUS | * | het | 92.0708 | 92.9408 | 91.2170 | 67.2524 | 2936 | 223 | 3043 | 293 | 261 | 89.0785 | |
| egarrison-hhga | INDEL | D16_PLUS | * | hetalt | 60.0179 | 43.0419 | 99.1060 | 48.8235 | 832 | 1101 | 776 | 7 | 6 | 85.7143 | |
| egarrison-hhga | INDEL | D16_PLUS | * | homalt | 94.6666 | 94.3853 | 94.9495 | 59.9952 | 1597 | 95 | 1598 | 85 | 63 | 74.1176 | |
| egarrison-hhga | INDEL | D1_5 | * | * | 96.9873 | 96.8033 | 97.1720 | 57.4559 | 142054 | 4691 | 142118 | 4136 | 3666 | 88.6364 | |
| egarrison-hhga | INDEL | D1_5 | * | het | 97.6225 | 99.3251 | 95.9773 | 54.9367 | 86983 | 591 | 87418 | 3664 | 3399 | 92.7675 | |
| egarrison-hhga | INDEL | D1_5 | * | hetalt | 77.5745 | 63.8360 | 98.8480 | 70.3665 | 6540 | 3705 | 6178 | 72 | 64 | 88.8889 | |
| egarrison-hhga | INDEL | D1_5 | * | homalt | 99.1875 | 99.1927 | 99.1824 | 59.4207 | 48531 | 395 | 48522 | 400 | 203 | 50.7500 | |
| egarrison-hhga | INDEL | D6_15 | * | * | 86.6592 | 82.4007 | 91.3819 | 53.7350 | 21500 | 4592 | 21631 | 2040 | 1771 | 86.8137 | |
| egarrison-hhga | INDEL | D6_15 | * | het | 92.3399 | 97.9037 | 87.3745 | 56.6927 | 11349 | 243 | 11924 | 1723 | 1642 | 95.2989 | |
| egarrison-hhga | INDEL | D6_15 | * | hetalt | 65.0139 | 48.4952 | 98.5994 | 42.7885 | 3964 | 4210 | 3520 | 50 | 43 | 86.0000 | |
| egarrison-hhga | INDEL | D6_15 | * | homalt | 96.8232 | 97.8027 | 95.8630 | 51.8789 | 6187 | 139 | 6187 | 267 | 86 | 32.2097 | |