PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59901-59950 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 86.6667 | 86.6667 | 86.6667 | 96.4455 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | het | 84.2105 | 88.8889 | 80.0000 | 95.9184 | 8 | 1 | 8 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0519 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l125_m1_e0 | * | 90.3207 | 83.7349 | 98.0309 | 89.6582 | 695 | 135 | 697 | 14 | 1 | 7.1429 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 85.0612 | 76.1317 | 96.3636 | 91.7079 | 370 | 116 | 371 | 14 | 1 | 7.1429 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8628 | 17 | 0 | 17 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.0079 | 94.1896 | 100.0000 | 84.1944 | 308 | 19 | 309 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m1_e0 | * | 47.1088 | 30.8267 | 99.8454 | 90.8763 | 9043 | 20292 | 9041 | 14 | 5 | 35.7143 | |
| asubramanian-gatk | SNP | ti | map_l125_m1_e0 | het | 50.2744 | 33.6034 | 99.7724 | 92.0217 | 6138 | 12128 | 6136 | 14 | 5 | 35.7143 | |
| asubramanian-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 90.3226 | 6 | 18 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m1_e0 | homalt | 41.5806 | 26.2472 | 100.0000 | 86.8829 | 2899 | 8146 | 2899 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l125_m1_e0 | * | 45.0440 | 29.0834 | 99.8285 | 92.0394 | 4658 | 11358 | 4657 | 8 | 1 | 12.5000 | |
| asubramanian-gatk | SNP | tv | map_l125_m1_e0 | het | 48.5238 | 32.0561 | 99.7847 | 92.9805 | 3246 | 6880 | 3245 | 7 | 1 | 14.2857 | |
| asubramanian-gatk | SNP | tv | map_l125_m1_e0 | hetalt | 37.8378 | 23.3333 | 100.0000 | 93.2692 | 7 | 23 | 7 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l125_m1_e0 | homalt | 38.6733 | 23.9761 | 99.9289 | 88.4461 | 1405 | 4455 | 1405 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | map_l125_m1_e0 | * | 46.3852 | 30.2138 | 99.8032 | 91.3119 | 13695 | 31632 | 13692 | 27 | 6 | 22.2222 | |
| asubramanian-gatk | SNP | * | map_l125_m1_e0 | het | 49.6482 | 33.0516 | 99.7236 | 92.3828 | 9384 | 19008 | 9381 | 26 | 6 | 23.0769 | |
| asubramanian-gatk | SNP | * | map_l125_m1_e0 | hetalt | 37.8378 | 23.3333 | 100.0000 | 93.2692 | 7 | 23 | 7 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l125_m1_e0 | homalt | 40.5846 | 25.4599 | 99.9768 | 87.4504 | 4304 | 12601 | 4304 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 91.7244 | 88.6029 | 95.0739 | 89.7371 | 964 | 124 | 965 | 50 | 5 | 10.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 89.7485 | 86.7769 | 92.9308 | 90.5838 | 630 | 96 | 631 | 48 | 4 | 8.3333 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 96.0784 | 12 | 1 | 12 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m1_e0 | homalt | 95.6909 | 92.2636 | 99.3827 | 86.3464 | 322 | 27 | 322 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 94.7368 | 92.3077 | 97.2973 | 92.3183 | 108 | 9 | 108 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 94.4882 | 93.7500 | 95.2381 | 93.7808 | 60 | 4 | 60 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 86.1789 | 17 | 2 | 17 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m1_e0 | homalt | 95.3846 | 91.1765 | 100.0000 | 89.9676 | 31 | 3 | 31 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 88.8889 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | tv | map_l125_m1_e0 | * | 91.3826 | 84.3531 | 99.6900 | 75.2873 | 13510 | 2506 | 13508 | 42 | 14 | 33.3333 | |
| astatham-gatk | SNP | tv | map_l125_m1_e0 | het | 86.0971 | 75.8345 | 99.5720 | 79.9490 | 7679 | 2447 | 7677 | 33 | 8 | 24.2424 | |
| astatham-gatk | SNP | tv | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 71.0000 | 29 | 1 | 29 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l125_m1_e0 | homalt | 99.4259 | 99.0102 | 99.8451 | 64.3015 | 5802 | 58 | 5802 | 9 | 6 | 66.6667 | |
| asubramanian-gatk | INDEL | * | map_l125_m1_e0 | * | 91.1206 | 86.6635 | 96.0609 | 96.9394 | 1826 | 281 | 1829 | 75 | 8 | 10.6667 | |
| asubramanian-gatk | INDEL | * | map_l125_m1_e0 | het | 88.1603 | 83.0712 | 93.9138 | 91.7400 | 1109 | 226 | 1111 | 72 | 7 | 9.7222 | |
| asubramanian-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 96.1039 | 92.5000 | 100.0000 | 93.3333 | 37 | 3 | 37 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l125_m1_e0 | homalt | 96.1134 | 92.8962 | 99.5614 | 86.8865 | 680 | 52 | 681 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | * | 90.5660 | 88.8889 | 92.3077 | 97.4181 | 24 | 3 | 24 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 90.0000 | 90.0000 | 90.0000 | 97.3545 | 18 | 2 | 18 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.2381 | 2 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0861 | 4 | 0 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 96.9697 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||