PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59851-59900 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.1831 | 2 | 2 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l125_m1_e0 | * | 83.2162 | 85.2022 | 81.3206 | 87.0514 | 927 | 161 | 936 | 215 | 77 | 35.8140 | |
| anovak-vg | INDEL | D1_5 | map_l125_m1_e0 | het | 81.8860 | 88.2920 | 76.3466 | 87.4430 | 641 | 85 | 652 | 202 | 65 | 32.1782 | |
| anovak-vg | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 38.4615 | 0.0000 | 0.0000 | 5 | 8 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l125_m1_e0 | homalt | 87.4215 | 80.5158 | 95.6229 | 85.7759 | 281 | 68 | 284 | 13 | 12 | 92.3077 | |
| anovak-vg | INDEL | D6_15 | map_l125_m1_e0 | * | 75.8631 | 73.5043 | 78.3784 | 88.8554 | 86 | 31 | 87 | 24 | 15 | 62.5000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m1_e0 | het | 77.8285 | 81.2500 | 74.6835 | 89.5641 | 52 | 12 | 59 | 20 | 11 | 55.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 31.5789 | 0.0000 | 0.0000 | 6 | 13 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l125_m1_e0 | homalt | 84.8485 | 82.3529 | 87.5000 | 86.6109 | 28 | 6 | 28 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l125_m1_e0 | * | 27.2727 | 20.0000 | 42.8571 | 80.5556 | 3 | 12 | 3 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l125_m1_e0 | het | 20.0000 | 11.1111 | 100.0000 | 85.7143 | 1 | 8 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 33.3333 | 33.3333 | 33.3333 | 79.3103 | 1 | 2 | 2 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | map_l125_m1_e0 | * | 59.3006 | 61.3253 | 57.4054 | 86.4983 | 509 | 321 | 531 | 394 | 267 | 67.7665 | |
| anovak-vg | INDEL | I1_5 | map_l125_m1_e0 | het | 49.2776 | 39.9177 | 64.3713 | 91.2405 | 194 | 292 | 215 | 119 | 14 | 11.7647 | |
| anovak-vg | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 41.1765 | 0.0000 | 0.0000 | 7 | 10 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l125_m1_e0 | homalt | 68.2142 | 94.1896 | 53.4687 | 80.5464 | 308 | 19 | 316 | 275 | 253 | 92.0000 | |
| astatham-gatk | INDEL | * | map_l125_m1_e0 | * | 96.6598 | 95.3963 | 97.9572 | 88.3361 | 2010 | 97 | 2014 | 42 | 9 | 21.4286 | |
| astatham-gatk | INDEL | * | map_l125_m1_e0 | het | 95.1476 | 93.1835 | 97.1963 | 89.1710 | 1244 | 91 | 1248 | 36 | 5 | 13.8889 | |
| astatham-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 92.4901 | 38 | 2 | 38 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l125_m1_e0 | homalt | 99.3179 | 99.4536 | 99.1826 | 86.0562 | 728 | 4 | 728 | 6 | 4 | 66.6667 | |
| anovak-vg | SNP | ti | map_l125_m1_e0 | * | 81.2273 | 86.8110 | 76.3184 | 74.3923 | 25466 | 3869 | 25253 | 7836 | 1746 | 22.2818 | |
| anovak-vg | SNP | ti | map_l125_m1_e0 | het | 77.2287 | 89.8883 | 67.6948 | 76.8145 | 16419 | 1847 | 16307 | 7782 | 1697 | 21.8067 | |
| anovak-vg | SNP | ti | map_l125_m1_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 8 | 16 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l125_m1_e0 | homalt | 89.7681 | 81.8379 | 99.4000 | 64.4522 | 9039 | 2006 | 8946 | 54 | 49 | 90.7407 | |
| anovak-vg | INDEL | I6_15 | map_l125_m1_e0 | * | 63.3663 | 60.3774 | 66.6667 | 86.5079 | 32 | 21 | 34 | 17 | 6 | 35.2941 | |
| anovak-vg | INDEL | I6_15 | map_l125_m1_e0 | het | 53.8462 | 46.6667 | 63.6364 | 86.1925 | 14 | 16 | 21 | 12 | 2 | 16.6667 | |
| anovak-vg | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 62.5000 | 0.0000 | 0.0000 | 5 | 3 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l125_m1_e0 | homalt | 78.7879 | 86.6667 | 72.2222 | 87.0504 | 13 | 2 | 13 | 5 | 4 | 80.0000 | |
| anovak-vg | SNP | tv | map_l125_m1_e0 | * | 80.6396 | 87.4563 | 74.8088 | 74.7170 | 14007 | 2009 | 13984 | 4709 | 1051 | 22.3190 | |
| anovak-vg | SNP | tv | map_l125_m1_e0 | het | 77.0260 | 91.5169 | 66.4968 | 76.6933 | 9267 | 859 | 9265 | 4668 | 1021 | 21.8723 | |
| anovak-vg | SNP | tv | map_l125_m1_e0 | hetalt | 0.0000 | 30.0000 | 0.0000 | 0.0000 | 9 | 21 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l125_m1_e0 | homalt | 88.9946 | 80.7338 | 99.1387 | 66.3699 | 4731 | 1129 | 4719 | 41 | 30 | 73.1707 | |
| anovak-vg | SNP | * | map_l125_m1_e0 | * | 81.0489 | 87.0673 | 75.8087 | 74.5245 | 39465 | 5862 | 39018 | 12451 | 2766 | 22.2151 | |
| anovak-vg | SNP | * | map_l125_m1_e0 | het | 77.1793 | 90.4691 | 67.2939 | 76.7918 | 25686 | 2706 | 25425 | 12357 | 2688 | 21.7529 | |
| anovak-vg | SNP | * | map_l125_m1_e0 | hetalt | 0.0000 | 30.0000 | 0.0000 | 0.0000 | 9 | 21 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l125_m1_e0 | homalt | 89.5021 | 81.4552 | 99.3132 | 65.1171 | 13770 | 3135 | 13593 | 94 | 78 | 82.9787 | |
| astatham-gatk | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 87.5000 | 79.2453 | 97.6744 | 93.5435 | 42 | 11 | 42 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 85.1852 | 76.6667 | 95.8333 | 94.2029 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 87.0370 | 7 | 1 | 7 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 93.9394 | 12 | 3 | 12 | 0 | 0 | ||