PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59601-59650 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | ti | map_l125_m1_e0 | * | 75.1104 | 60.3648 | 99.3885 | 86.1772 | 17708 | 11627 | 17715 | 109 | 33 | 30.2752 | |
| gduggal-bwaplat | SNP | ti | map_l125_m1_e0 | het | 79.9258 | 66.9495 | 99.1416 | 88.1040 | 12229 | 6037 | 12243 | 106 | 30 | 28.3019 | |
| gduggal-bwaplat | SNP | ti | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 89.1892 | 12 | 12 | 12 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l125_m1_e0 | homalt | 66.2065 | 49.4975 | 99.9451 | 78.1716 | 5467 | 5578 | 5460 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | * | 74.9249 | 60.1205 | 99.4024 | 93.7871 | 499 | 331 | 499 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | het | 79.2593 | 66.0494 | 99.0741 | 94.2776 | 321 | 165 | 321 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 69.2308 | 52.9412 | 100.0000 | 98.0176 | 9 | 8 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | homalt | 68.1452 | 51.6820 | 100.0000 | 91.3951 | 169 | 158 | 169 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m1_e0 | * | 73.1779 | 57.8921 | 99.4316 | 88.1943 | 9272 | 6744 | 9272 | 53 | 13 | 24.5283 | |
| gduggal-bwaplat | SNP | tv | map_l125_m1_e0 | het | 78.1031 | 64.4085 | 99.1939 | 89.8771 | 6522 | 3604 | 6522 | 53 | 13 | 24.5283 | |
| gduggal-bwaplat | SNP | tv | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.0635 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m1_e0 | homalt | 63.6417 | 46.6724 | 100.0000 | 80.2470 | 2735 | 3125 | 2735 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 99.0476 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 98.9247 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | * | map_l125_m1_e0 | * | 91.5570 | 95.1115 | 88.2586 | 89.4208 | 2004 | 103 | 2007 | 267 | 71 | 26.5918 | |
| gduggal-bwavard | INDEL | * | map_l125_m1_e0 | het | 90.3770 | 98.4270 | 83.5443 | 91.2553 | 1314 | 21 | 1320 | 260 | 67 | 25.7692 | |
| gduggal-bwavard | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 2.5000 | 0.0000 | 0.0000 | 1 | 39 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l125_m1_e0 | homalt | 96.4972 | 94.1257 | 98.9914 | 79.7491 | 689 | 43 | 687 | 7 | 4 | 57.1429 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m1_e0 | * | 97.6843 | 96.6265 | 98.7654 | 85.1240 | 802 | 28 | 800 | 10 | 2 | 20.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m1_e0 | het | 96.4347 | 94.4444 | 98.5106 | 85.0794 | 459 | 27 | 463 | 7 | 1 | 14.2857 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.6860 | 17 | 0 | 11 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.3902 | 99.6942 | 99.0881 | 84.2433 | 326 | 1 | 326 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m1_e0 | * | 94.7920 | 92.3077 | 97.4138 | 88.3300 | 108 | 9 | 113 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m1_e0 | het | 94.7694 | 92.1875 | 97.5000 | 85.8156 | 59 | 5 | 78 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 90.6250 | 17 | 2 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l125_m1_e0 | homalt | 95.5224 | 94.1176 | 96.9697 | 91.7085 | 32 | 2 | 32 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m1_e0 | * | 42.1053 | 26.6667 | 100.0000 | 87.0968 | 4 | 11 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 81.2500 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 92.3077 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l125_m1_e0 | * | 98.9304 | 98.8478 | 99.0132 | 72.1354 | 28997 | 338 | 28997 | 289 | 84 | 29.0657 | |
| gduggal-bwafb | SNP | ti | map_l125_m1_e0 | het | 98.5889 | 98.6861 | 98.4920 | 74.2606 | 18026 | 240 | 18026 | 276 | 77 | 27.8986 | |
| gduggal-bwafb | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.3704 | 24 | 0 | 24 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l125_m1_e0 | homalt | 99.4956 | 99.1127 | 99.8814 | 67.6839 | 10947 | 98 | 10947 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | SNP | * | map_l125_m1_e0 | * | 98.8277 | 98.8550 | 98.8005 | 72.4101 | 44808 | 519 | 44808 | 544 | 134 | 24.6324 | |
| gduggal-bwafb | SNP | * | map_l125_m1_e0 | het | 98.4352 | 98.7039 | 98.1679 | 74.4388 | 28024 | 368 | 28024 | 523 | 121 | 23.1358 | |
| gduggal-bwafb | SNP | * | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 76.9841 | 29 | 1 | 29 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l125_m1_e0 | homalt | 99.4923 | 99.1127 | 99.8748 | 68.0895 | 16755 | 150 | 16755 | 21 | 13 | 61.9048 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m1_e0 | * | 83.8710 | 73.5849 | 97.5000 | 86.4865 | 39 | 14 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m1_e0 | het | 72.3404 | 56.6667 | 100.0000 | 88.3721 | 17 | 13 | 20 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 77.7778 | 7 | 1 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.7742 | 100.0000 | 93.7500 | 84.9057 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m1_e0 | * | 84.0000 | 77.7778 | 91.3043 | 89.6396 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m1_e0 | het | 86.7470 | 80.0000 | 94.7368 | 83.8983 | 16 | 4 | 18 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 96.0784 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m1_e0 | * | 97.7461 | 97.7022 | 97.7901 | 86.2288 | 1063 | 25 | 1062 | 24 | 2 | 8.3333 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m1_e0 | het | 97.3253 | 97.6584 | 96.9945 | 85.1972 | 709 | 17 | 710 | 22 | 0 | 0.0000 | |