PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59551-59600 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 81.2500 | 68.4211 | 100.0000 | 82.3529 | 13 | 6 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l125_m1_e0 | homalt | 80.6452 | 73.5294 | 89.2857 | 90.8497 | 25 | 9 | 25 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 27 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | * | 98.6420 | 98.8699 | 98.4152 | 72.8937 | 15835 | 181 | 15835 | 255 | 50 | 19.6078 | |
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | het | 98.1591 | 98.7359 | 97.5891 | 74.7511 | 9998 | 128 | 9998 | 247 | 44 | 17.8138 | |
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 76.9841 | 29 | 1 | 29 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | homalt | 99.4861 | 99.1126 | 99.8624 | 68.8267 | 5808 | 52 | 5808 | 8 | 6 | 75.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m1_e0 | * | 75.7994 | 61.3194 | 99.2320 | 94.1880 | 1292 | 815 | 1292 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m1_e0 | het | 78.5553 | 65.1685 | 98.8636 | 94.8423 | 870 | 465 | 870 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | * | map_l125_m1_e0 | hetalt | 73.0159 | 57.5000 | 100.0000 | 97.2121 | 23 | 17 | 23 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m1_e0 | homalt | 70.5570 | 54.5082 | 100.0000 | 91.1628 | 399 | 333 | 399 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m1_e0 | * | 74.4186 | 59.2593 | 100.0000 | 97.0909 | 16 | 11 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m1_e0 | het | 75.0000 | 60.0000 | 100.0000 | 97.3392 | 12 | 8 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.0000 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.6102 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m1_e0 | * | 77.0354 | 63.0515 | 98.9899 | 94.0592 | 686 | 402 | 686 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m1_e0 | het | 79.1426 | 66.1157 | 98.5626 | 94.6081 | 480 | 246 | 480 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 76.1905 | 61.5385 | 100.0000 | 98.3968 | 8 | 5 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m1_e0 | homalt | 72.3949 | 56.7335 | 100.0000 | 90.7216 | 198 | 151 | 198 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m1_e0 | * | 77.4869 | 63.2479 | 100.0000 | 95.7544 | 74 | 43 | 74 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m1_e0 | het | 78.0952 | 64.0625 | 100.0000 | 96.9675 | 41 | 23 | 41 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 73.3333 | 57.8947 | 100.0000 | 93.6047 | 11 | 8 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m1_e0 | homalt | 78.5714 | 64.7059 | 100.0000 | 89.9543 | 22 | 12 | 22 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m1_e0 | * | 33.3333 | 20.0000 | 100.0000 | 97.3214 | 3 | 12 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m1_e0 | het | 20.0000 | 11.1111 | 100.0000 | 98.8372 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 85.7143 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 94.7368 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m1_e0 | * | 70.7317 | 54.7170 | 100.0000 | 95.6652 | 29 | 24 | 29 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 96.8553 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.4110 | 7 | 1 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m1_e0 | homalt | 63.6364 | 46.6667 | 100.0000 | 94.1176 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | * | 74.4387 | 59.4965 | 99.4030 | 86.9422 | 26968 | 18359 | 26975 | 162 | 46 | 28.3951 | |
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | het | 79.2823 | 66.0433 | 99.1598 | 88.7864 | 18751 | 9641 | 18765 | 159 | 43 | 27.0440 | |
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.0635 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | homalt | 65.3285 | 48.5182 | 99.9634 | 78.9108 | 8202 | 8703 | 8195 | 3 | 3 | 100.0000 | |