PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59501-59550 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 6 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | map_l125_m0_e0 | * | 95.1860 | 95.5645 | 94.8104 | 87.9856 | 474 | 22 | 475 | 26 | 7 | 26.9231 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m0_e0 | het | 94.2433 | 95.0725 | 93.4286 | 84.6491 | 328 | 17 | 327 | 23 | 5 | 21.7391 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l125_m0_e0 | homalt | 97.2926 | 96.6216 | 97.9730 | 91.7226 | 143 | 5 | 145 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | * | 79.6826 | 70.2128 | 92.1053 | 89.7849 | 33 | 14 | 35 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | het | 80.3709 | 68.9655 | 96.2963 | 85.1648 | 20 | 9 | 26 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 66.6667 | 100.0000 | 4 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | homalt | 78.2609 | 75.0000 | 81.8182 | 93.9891 | 9 | 3 | 9 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | * | map_l125_m0_e0 | * | 95.4423 | 95.2231 | 95.6625 | 77.2744 | 18459 | 926 | 18460 | 837 | 394 | 47.0729 | |
| gduggal-snapfb | SNP | * | map_l125_m0_e0 | het | 95.0102 | 96.1466 | 93.9004 | 73.7575 | 12176 | 488 | 12177 | 791 | 378 | 47.7876 | |
| gduggal-snapfb | SNP | * | map_l125_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.7020 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | map_l125_m0_e0 | homalt | 96.2940 | 93.4893 | 99.2723 | 82.1168 | 6275 | 437 | 6275 | 46 | 16 | 34.7826 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | * | 71.4286 | 66.6667 | 76.9231 | 86.8687 | 10 | 5 | 10 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | het | 77.7778 | 77.7778 | 77.7778 | 82.3529 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 92.5000 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m1_e0 | * | 81.2500 | 73.5849 | 90.6977 | 82.0084 | 39 | 14 | 39 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m1_e0 | het | 80.3653 | 73.3333 | 88.8889 | 78.9062 | 22 | 8 | 24 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 77.4194 | 75.0000 | 80.0000 | 68.7500 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m1_e0 | homalt | 84.6154 | 73.3333 | 100.0000 | 88.4211 | 11 | 4 | 11 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | map_l125_m1_e0 | * | 96.2822 | 96.8675 | 95.7041 | 87.0978 | 804 | 26 | 802 | 36 | 7 | 19.4444 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m1_e0 | het | 95.1089 | 95.6790 | 94.5455 | 85.1619 | 465 | 21 | 468 | 27 | 3 | 11.1111 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 83.1234 | 88.2353 | 78.5714 | 94.2857 | 15 | 2 | 11 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m1_e0 | homalt | 98.6273 | 99.0826 | 98.1763 | 88.7097 | 324 | 3 | 323 | 6 | 3 | 50.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m1_e0 | * | 96.8890 | 96.7104 | 97.0682 | 71.9792 | 28370 | 965 | 28374 | 857 | 408 | 47.6079 | |
| gduggal-snapfb | SNP | ti | map_l125_m1_e0 | het | 96.3921 | 97.2572 | 95.5423 | 70.8639 | 17765 | 501 | 17768 | 829 | 394 | 47.5271 | |
| gduggal-snapfb | SNP | ti | map_l125_m1_e0 | hetalt | 93.8776 | 95.8333 | 92.0000 | 83.9744 | 23 | 1 | 23 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m1_e0 | homalt | 97.7417 | 95.8081 | 99.7549 | 73.6978 | 10582 | 463 | 10583 | 26 | 14 | 53.8462 | |
| gduggal-snapfb | SNP | * | map_l125_m1_e0 | * | 96.8640 | 96.8959 | 96.8321 | 72.7854 | 43920 | 1407 | 43924 | 1437 | 620 | 43.1454 | |
| gduggal-snapfb | SNP | * | map_l125_m1_e0 | het | 96.3552 | 97.4817 | 95.2545 | 71.3326 | 27677 | 715 | 27680 | 1379 | 599 | 43.4373 | |
| gduggal-snapfb | SNP | * | map_l125_m1_e0 | hetalt | 91.8033 | 93.3333 | 90.3226 | 86.9198 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l125_m1_e0 | homalt | 97.7543 | 95.9184 | 99.6620 | 74.9969 | 16215 | 690 | 16216 | 55 | 21 | 38.1818 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m1_e0 | * | 95.8482 | 96.5993 | 95.1087 | 86.1498 | 1051 | 37 | 1050 | 54 | 9 | 16.6667 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m1_e0 | het | 94.9153 | 96.4187 | 93.4579 | 83.5312 | 700 | 26 | 700 | 49 | 6 | 12.2449 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 96.7136 | 9 | 4 | 7 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.2779 | 97.9943 | 98.5632 | 89.1589 | 342 | 7 | 343 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m1_e0 | * | 83.1665 | 75.2137 | 93.0000 | 84.8485 | 88 | 29 | 93 | 7 | 6 | 85.7143 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m1_e0 | het | 85.4139 | 78.1250 | 94.2029 | 79.5252 | 50 | 14 | 65 | 4 | 3 | 75.0000 | |