PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5901-5950 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I6_15 | HG002complexvar | * | 92.2263 | 91.5275 | 92.9358 | 54.4267 | 4386 | 406 | 4473 | 340 | 144 | 42.3529 | |
| qzeng-custom | INDEL | I6_15 | HG002complexvar | het | 94.4892 | 95.7962 | 93.2173 | 56.1507 | 2256 | 99 | 2625 | 191 | 60 | 31.4136 | |
| qzeng-custom | INDEL | I6_15 | HG002complexvar | hetalt | 86.3689 | 76.2878 | 99.5200 | 53.0075 | 933 | 290 | 622 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | HG002complexvar | homalt | 93.7520 | 98.5997 | 89.3586 | 51.1570 | 1197 | 17 | 1226 | 146 | 83 | 56.8493 | |
| mlin-fermikit | SNP | * | HG002complexvar | * | 98.2239 | 97.1863 | 99.2840 | 18.6883 | 733159 | 21226 | 733074 | 5287 | 5014 | 94.8364 | |
| mlin-fermikit | SNP | * | HG002complexvar | het | 98.1632 | 96.4217 | 99.9688 | 17.2653 | 448843 | 16657 | 448744 | 140 | 23 | 16.4286 | |
| mlin-fermikit | SNP | * | HG002complexvar | hetalt | 95.9866 | 92.5806 | 99.6528 | 34.0961 | 287 | 23 | 287 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | * | HG002complexvar | homalt | 98.3225 | 98.4247 | 98.2205 | 20.7847 | 284029 | 4546 | 284043 | 5146 | 4990 | 96.9685 | |
| ndellapenna-hhga | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | HG002complexvar | * | 14.2857 | 100.0000 | 1 | 6 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | HG002complexvar | het | 14.2857 | 100.0000 | 1 | 6 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 0.0000 | 100.0000 | 98.8506 | 0 | 4 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 100.0000 | 95.2381 | 0 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | HG002complexvar | het | 98.0988 | 96.3081 | 99.9573 | 20.3091 | 145169 | 5565 | 145103 | 62 | 9 | 14.5161 | |
| mlin-fermikit | SNP | tv | HG002complexvar | hetalt | 95.9866 | 92.5806 | 99.6528 | 34.0961 | 287 | 23 | 287 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | tv | HG002complexvar | homalt | 98.2029 | 98.2799 | 98.1261 | 24.4893 | 93475 | 1636 | 93471 | 1785 | 1729 | 96.8627 | |
| ndellapenna-hhga | INDEL | * | HG002complexvar | * | 97.2866 | 96.6882 | 97.8924 | 67.2163 | 74390 | 2548 | 74363 | 1601 | 1150 | 71.8301 | |
| ndellapenna-hhga | INDEL | * | HG002complexvar | het | 97.4850 | 96.9835 | 97.9917 | 54.0711 | 44818 | 1394 | 44840 | 919 | 671 | 73.0141 | |
| ndellapenna-hhga | INDEL | * | HG002complexvar | hetalt | 86.5340 | 77.9941 | 97.1740 | 71.6888 | 2885 | 814 | 2854 | 83 | 75 | 90.3614 | |
| ndellapenna-hhga | INDEL | * | HG002complexvar | homalt | 98.2704 | 98.7420 | 97.8033 | 53.5832 | 26687 | 340 | 26669 | 599 | 404 | 67.4457 | |
| mlin-fermikit | INDEL | I6_15 | HG002complexvar | * | 88.7918 | 85.8097 | 91.9886 | 56.6838 | 4112 | 680 | 4191 | 365 | 361 | 98.9041 | |
| mlin-fermikit | INDEL | I6_15 | HG002complexvar | het | 91.0577 | 91.3376 | 90.7795 | 57.5294 | 2151 | 204 | 2166 | 220 | 217 | 98.6364 | |
| mlin-fermikit | INDEL | I6_15 | HG002complexvar | hetalt | 80.4538 | 68.1930 | 98.0899 | 54.1945 | 834 | 389 | 873 | 17 | 17 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | HG002complexvar | homalt | 91.3948 | 92.8336 | 90.0000 | 56.7129 | 1127 | 87 | 1152 | 128 | 127 | 99.2188 | |
| mlin-fermikit | SNP | ti | HG002complexvar | * | 98.2652 | 97.2431 | 99.3090 | 16.9696 | 494420 | 14017 | 494405 | 3440 | 3276 | 95.2326 | |
| mlin-fermikit | SNP | ti | HG002complexvar | het | 98.1941 | 96.4761 | 99.9743 | 15.7268 | 303674 | 11092 | 303641 | 78 | 14 | 17.9487 | |
| mlin-fermikit | SNP | ti | HG002complexvar | hetalt | 96.0000 | 92.7536 | 99.4819 | 33.9041 | 192 | 15 | 192 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | ti | HG002complexvar | homalt | 98.3813 | 98.4958 | 98.2669 | 18.8239 | 190554 | 2910 | 190572 | 3361 | 3261 | 97.0247 | |
| mlin-fermikit | SNP | tv | HG002complexvar | * | 98.1368 | 97.0653 | 99.2323 | 22.0366 | 238931 | 7224 | 238861 | 1848 | 1739 | 94.1017 | |
| qzeng-custom | INDEL | * | HG002complexvar | * | 97.6731 | 97.4200 | 97.9274 | 54.9567 | 74953 | 1985 | 77253 | 1635 | 731 | 44.7095 | |
| qzeng-custom | INDEL | * | HG002complexvar | het | 97.8163 | 97.7928 | 97.8398 | 56.2530 | 45192 | 1020 | 49233 | 1087 | 393 | 36.1546 | |
| qzeng-custom | INDEL | * | HG002complexvar | hetalt | 90.0705 | 82.9143 | 98.5786 | 66.1860 | 3067 | 632 | 1179 | 17 | 13 | 76.4706 | |
| qzeng-custom | INDEL | * | HG002complexvar | homalt | 98.4127 | 98.7679 | 98.0601 | 51.6191 | 26694 | 333 | 26841 | 531 | 325 | 61.2053 | |
| qzeng-custom | INDEL | C6_15 | HG002complexvar | * | 94.6429 | 100.0000 | 89.8305 | 90.1503 | 4 | 0 | 53 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | C6_15 | HG002complexvar | het | 97.2222 | 100.0000 | 94.5946 | 90.1070 | 4 | 0 | 35 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 80.0000 | 90.0498 | 0 | 0 | 16 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | D16_PLUS | HG002complexvar | * | 86.2026 | 93.2441 | 80.1500 | 61.6049 | 1532 | 111 | 1603 | 397 | 75 | 18.8917 | |
| qzeng-custom | INDEL | D16_PLUS | HG002complexvar | het | 88.4674 | 95.9350 | 82.0784 | 59.1925 | 1062 | 45 | 1319 | 288 | 45 | 15.6250 | |
| qzeng-custom | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 76.9231 | 0.0000 | 0.0000 | 190 | 57 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | HG002complexvar | homalt | 82.7833 | 96.8858 | 72.2646 | 69.0795 | 280 | 9 | 284 | 109 | 30 | 27.5229 | |
| qzeng-custom | INDEL | D1_5 | HG002complexvar | * | 98.5796 | 98.0926 | 99.0713 | 54.7462 | 32091 | 624 | 32325 | 303 | 168 | 55.4455 | |
| qzeng-custom | INDEL | D1_5 | HG002complexvar | het | 98.6823 | 98.3530 | 99.0138 | 55.4973 | 20423 | 342 | 21686 | 216 | 103 | 47.6852 | |