PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59401-59450 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | * | 92.6762 | 91.7234 | 93.6490 | 88.7210 | 809 | 73 | 811 | 55 | 16 | 29.0909 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | het | 91.8622 | 90.9710 | 92.7711 | 85.6224 | 534 | 53 | 539 | 42 | 9 | 21.4286 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | hetalt | 64.0000 | 72.7273 | 57.1429 | 96.1111 | 8 | 3 | 4 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | homalt | 95.1935 | 94.0141 | 96.4029 | 91.9583 | 267 | 17 | 268 | 10 | 6 | 60.0000 | |
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | * | 94.2056 | 97.3045 | 91.2979 | 82.1654 | 12418 | 344 | 12317 | 1174 | 66 | 5.6218 | |
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | het | 92.1685 | 97.6038 | 87.3066 | 84.9758 | 8065 | 198 | 8013 | 1165 | 59 | 5.0644 | |
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | homalt | 98.3384 | 96.9272 | 99.7913 | 70.3716 | 4353 | 138 | 4304 | 9 | 7 | 77.7778 | |
| gduggal-bwavard | SNP | * | map_l125_m0_e0 | * | 93.5292 | 97.4826 | 89.8840 | 82.4074 | 18897 | 488 | 18668 | 2101 | 98 | 4.6645 | |
| gduggal-bwavard | SNP | * | map_l125_m0_e0 | het | 91.2008 | 97.7811 | 85.4502 | 85.0594 | 12383 | 281 | 12251 | 2086 | 87 | 4.1707 | |
| gduggal-bwavard | SNP | * | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | map_l125_m0_e0 | homalt | 98.3897 | 97.0501 | 99.7668 | 70.8893 | 6514 | 198 | 6417 | 15 | 11 | 73.3333 | |
| gduggal-snapfb | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | tv | map_l125_m0_e0 | * | 92.0149 | 97.7077 | 86.9489 | 82.9272 | 6479 | 152 | 6469 | 971 | 34 | 3.5015 | |
| gduggal-bwavard | SNP | tv | map_l125_m0_e0 | het | 89.1615 | 98.1141 | 81.7062 | 85.2941 | 4318 | 83 | 4310 | 965 | 30 | 3.1088 | |
| gduggal-bwavard | SNP | tv | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l125_m0_e0 | homalt | 98.4958 | 97.2985 | 99.7229 | 71.9123 | 2161 | 60 | 2159 | 6 | 4 | 66.6667 | |
| gduggal-snapfb | INDEL | C16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 33.3333 | 96.2073 | 0 | 0 | 10 | 20 | 2 | 10.0000 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 16.6667 | 96.5468 | 0 | 0 | 4 | 20 | 2 | 10.0000 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 93.7500 | 0 | 0 | 6 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m0_e0 | * | 68.9655 | 83.3333 | 58.8235 | 95.6962 | 10 | 2 | 10 | 7 | 2 | 28.5714 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m0_e0 | het | 69.5652 | 88.8889 | 57.1429 | 96.0114 | 8 | 1 | 8 | 6 | 1 | 16.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 93.1818 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | * | 90.7857 | 97.5806 | 84.8754 | 90.3137 | 484 | 12 | 477 | 85 | 9 | 10.5882 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | het | 88.6305 | 99.1304 | 80.1418 | 91.5077 | 342 | 3 | 339 | 84 | 8 | 9.5238 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | homalt | 97.5848 | 95.9459 | 99.2806 | 83.0694 | 142 | 6 | 138 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 99.2366 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 99.1935 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D6_15 | map_l125_m0_e0 | * | 76.2887 | 78.7234 | 74.0000 | 94.1725 | 37 | 10 | 37 | 13 | 8 | 61.5385 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m0_e0 | het | 81.6901 | 100.0000 | 69.0476 | 94.4591 | 29 | 0 | 29 | 13 | 8 | 61.5385 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 6 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | map_l125_m0_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 92.0000 | 8 | 4 | 8 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m0_e0 | * | 66.6667 | 66.6667 | 66.6667 | 93.2584 | 4 | 2 | 4 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m0_e0 | het | 75.0000 | 100.0000 | 60.0000 | 93.8272 | 3 | 0 | 3 | 2 | 1 | 50.0000 | |