PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59201-59250 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D6_15 | map_l125_m0_e0 | * | 48.2759 | 44.6809 | 52.5000 | 95.1574 | 21 | 26 | 21 | 19 | 9 | 47.3684 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m0_e0 | het | 46.1538 | 41.3793 | 52.1739 | 96.1474 | 12 | 17 | 12 | 11 | 2 | 18.1818 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 6 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l125_m0_e0 | homalt | 62.0690 | 75.0000 | 52.9412 | 92.5764 | 9 | 3 | 9 | 8 | 7 | 87.5000 | |
| ciseli-custom | SNP | ti | map_l125_m0_e0 | * | 78.8823 | 74.4554 | 83.8690 | 80.0753 | 9502 | 3260 | 9499 | 1827 | 513 | 28.0788 | |
| ciseli-custom | SNP | ti | map_l125_m0_e0 | het | 74.4671 | 68.2803 | 81.8868 | 84.0446 | 5642 | 2621 | 5642 | 1248 | 40 | 3.2051 | |
| ciseli-custom | SNP | ti | map_l125_m0_e0 | hetalt | 61.5385 | 50.0000 | 80.0000 | 82.1429 | 4 | 4 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l125_m0_e0 | homalt | 86.4046 | 85.8606 | 86.9555 | 67.4980 | 3856 | 635 | 3853 | 578 | 472 | 81.6609 | |
| ckim-dragen | INDEL | * | map_l125_m0_e0 | * | 95.5436 | 96.1451 | 94.9495 | 90.2750 | 848 | 34 | 846 | 45 | 8 | 17.7778 | |
| ckim-dragen | INDEL | * | map_l125_m0_e0 | het | 94.7671 | 95.7411 | 93.8127 | 91.0559 | 562 | 25 | 561 | 37 | 3 | 8.1081 | |
| ckim-dragen | INDEL | * | map_l125_m0_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 95.2128 | 9 | 2 | 9 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l125_m0_e0 | homalt | 97.3588 | 97.5352 | 97.1831 | 87.5874 | 277 | 7 | 276 | 8 | 5 | 62.5000 | |
| ckim-isaac | INDEL | C16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | * | 77.3562 | 63.7097 | 98.4424 | 89.5098 | 316 | 180 | 316 | 5 | 1 | 20.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | het | 80.1370 | 67.8261 | 97.9079 | 90.6968 | 234 | 111 | 234 | 5 | 1 | 20.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | homalt | 70.1754 | 54.0541 | 100.0000 | 79.5396 | 80 | 68 | 80 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l125_m0_e0 | * | 75.7650 | 61.6780 | 98.1917 | 90.2709 | 544 | 338 | 543 | 10 | 2 | 20.0000 | |
| ckim-isaac | INDEL | * | map_l125_m0_e0 | het | 78.6935 | 65.7581 | 97.9644 | 91.7001 | 386 | 201 | 385 | 8 | 2 | 25.0000 | |
| ckim-isaac | INDEL | * | map_l125_m0_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 95.6790 | 7 | 4 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l125_m0_e0 | homalt | 69.1076 | 53.1690 | 98.6928 | 80.5591 | 151 | 133 | 151 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | D16_PLUS | map_l125_m0_e0 | * | 26.6667 | 16.6667 | 66.6667 | 96.5517 | 2 | 10 | 2 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l125_m0_e0 | het | 18.1818 | 11.1111 | 50.0000 | 97.1014 | 1 | 8 | 1 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ckim-gatk | SNP | tv | map_l125_m0_e0 | * | 75.4506 | 61.8308 | 96.7658 | 90.3686 | 4100 | 2531 | 4099 | 137 | 8 | 5.8394 | |
| ckim-gatk | SNP | tv | map_l125_m0_e0 | het | 78.5920 | 66.7348 | 95.5729 | 91.8237 | 2937 | 1464 | 2936 | 136 | 8 | 5.8824 | |
| ckim-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 97.9167 | 2 | 7 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m0_e0 | homalt | 68.6373 | 52.2738 | 99.9139 | 81.5935 | 1161 | 1060 | 1161 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m0_e0 | * | 50.0000 | 34.0426 | 94.1176 | 94.5860 | 16 | 31 | 16 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m0_e0 | het | 37.8378 | 24.1379 | 87.5000 | 96.7347 | 7 | 22 | 7 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.4762 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l125_m0_e0 | homalt | 58.8235 | 41.6667 | 100.0000 | 81.4815 | 5 | 7 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | SNP | * | map_l125_m0_e0 | * | 98.0759 | 98.7207 | 97.4394 | 76.5498 | 19137 | 248 | 19141 | 503 | 56 | 11.1332 | |
| ckim-dragen | SNP | * | map_l125_m0_e0 | het | 97.3570 | 98.4523 | 96.2857 | 80.0772 | 12468 | 196 | 12469 | 481 | 37 | 7.6923 | |
| ckim-dragen | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.9375 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l125_m0_e0 | homalt | 99.4476 | 99.2253 | 99.6709 | 64.2590 | 6660 | 52 | 6663 | 22 | 19 | 86.3636 | |
| ckim-dragen | SNP | ti | map_l125_m0_e0 | * | 98.1359 | 98.7776 | 97.5025 | 75.7277 | 12606 | 156 | 12610 | 323 | 39 | 12.0743 | |
| ckim-dragen | SNP | ti | map_l125_m0_e0 | het | 97.4340 | 98.5598 | 96.3335 | 79.4732 | 8144 | 119 | 8145 | 310 | 27 | 8.7097 | |