PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59151-59200 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.1429 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m0_e0 | * | 76.5382 | 63.0075 | 97.4697 | 89.2235 | 12214 | 7171 | 12211 | 317 | 31 | 9.7792 | |
| ckim-gatk | SNP | * | map_l125_m0_e0 | het | 79.9330 | 68.2249 | 96.4920 | 90.8886 | 8640 | 4024 | 8637 | 314 | 30 | 9.5541 | |
| ckim-gatk | SNP | * | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 97.9167 | 2 | 7 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m0_e0 | homalt | 69.4469 | 53.2181 | 99.9161 | 80.0469 | 3572 | 3140 | 3572 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m0_e0 | * | 94.8781 | 98.7903 | 91.2639 | 91.8584 | 490 | 6 | 491 | 47 | 3 | 6.3830 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 93.3136 | 98.8406 | 88.3721 | 92.6760 | 341 | 4 | 342 | 45 | 1 | 2.2222 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.5185 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.9899 | 99.3243 | 98.6577 | 87.4685 | 147 | 1 | 147 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 96.5389 | 98.7097 | 94.4615 | 92.2711 | 306 | 4 | 307 | 18 | 2 | 11.1111 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 95.2090 | 97.9167 | 92.6471 | 93.7748 | 188 | 4 | 189 | 15 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.7447 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 85.9712 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 86.6667 | 86.6667 | 86.6667 | 96.0212 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 84.2105 | 88.8889 | 80.0000 | 96.2264 | 8 | 1 | 8 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.5652 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.6351 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 97.6596 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l125_m0_e0 | * | 77.0822 | 63.5950 | 97.8298 | 88.5344 | 8116 | 4646 | 8114 | 180 | 23 | 12.7778 | |
| ckim-gatk | SNP | ti | map_l125_m0_e0 | het | 80.6416 | 69.0185 | 96.9723 | 90.3096 | 5703 | 2560 | 5701 | 178 | 22 | 12.3596 | |
| ckim-gatk | SNP | ti | map_l125_m0_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 96.9697 | 2 | 6 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l125_m0_e0 | homalt | 69.8436 | 53.6851 | 99.9171 | 79.2054 | 2411 | 2080 | 2411 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.9472 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 97.7901 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.6755 | 2 | 0 | 2 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_l125_m0_e0 | * | 56.0912 | 49.6774 | 64.4068 | 91.5984 | 154 | 156 | 152 | 84 | 66 | 78.5714 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m0_e0 | het | 62.2449 | 63.5417 | 61.0000 | 91.6771 | 122 | 70 | 122 | 78 | 63 | 80.7692 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I1_5 | map_l125_m0_e0 | homalt | 41.9948 | 28.0702 | 83.3333 | 91.1330 | 32 | 82 | 30 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m0_e0 | * | 31.5789 | 20.0000 | 75.0000 | 96.2264 | 3 | 12 | 3 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m0_e0 | het | 36.3636 | 22.2222 | 100.0000 | 97.4026 | 2 | 7 | 2 | 0 | 0 | ||
| ciseli-custom | SNP | tv | map_l125_m0_e0 | * | 75.4859 | 70.1855 | 81.6523 | 81.6008 | 4654 | 1977 | 4655 | 1046 | 265 | 25.3346 | |
| ciseli-custom | SNP | tv | map_l125_m0_e0 | het | 70.2747 | 63.3947 | 78.8298 | 84.9536 | 2790 | 1611 | 2789 | 749 | 26 | 3.4713 | |
| ciseli-custom | SNP | tv | map_l125_m0_e0 | hetalt | 53.3333 | 44.4444 | 66.6667 | 85.3659 | 4 | 5 | 4 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | tv | map_l125_m0_e0 | homalt | 85.0153 | 83.7461 | 86.3236 | 70.9690 | 1860 | 361 | 1862 | 295 | 238 | 80.6780 | |
| ciseli-custom | INDEL | I16_PLUS | map_l125_m0_e0 | * | 0.0000 | 100.0000 | 0 | 6 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m0_e0 | het | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | map_l125_m0_e0 | homalt | 25.0000 | 16.6667 | 50.0000 | 93.1034 | 1 | 5 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | map_l125_m0_e0 | * | 77.7410 | 73.0049 | 83.1343 | 80.5630 | 14152 | 5233 | 14132 | 2867 | 775 | 27.0317 | |
| ciseli-custom | SNP | * | map_l125_m0_e0 | het | 73.0283 | 66.5824 | 80.8560 | 84.3182 | 8432 | 4232 | 8426 | 1995 | 66 | 3.3083 | |
| ciseli-custom | SNP | * | map_l125_m0_e0 | hetalt | 53.3333 | 44.4444 | 66.6667 | 85.3659 | 4 | 5 | 4 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | * | map_l125_m0_e0 | homalt | 85.9540 | 85.1609 | 86.7620 | 68.6495 | 5716 | 996 | 5702 | 870 | 708 | 81.3793 | |