PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58801-58850 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | * | 98.1288 | 96.4862 | 99.8283 | 59.5773 | 6398 | 233 | 6396 | 11 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | het | 97.3350 | 95.0239 | 99.7613 | 54.4961 | 4182 | 219 | 4180 | 10 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 74.0741 | 7 | 2 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | homalt | 99.7066 | 99.4597 | 99.9548 | 66.5911 | 2209 | 12 | 2209 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | * | 95.9750 | 93.1973 | 98.9234 | 83.1757 | 822 | 60 | 827 | 9 | 2 | 22.2222 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | het | 94.4773 | 90.2896 | 99.0724 | 78.4572 | 530 | 57 | 534 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 96.6197 | 10 | 1 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | homalt | 98.9449 | 99.2958 | 98.5965 | 86.3047 | 282 | 2 | 281 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | * | 56.0000 | 46.6667 | 70.0000 | 94.1176 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | het | 42.8571 | 33.3333 | 60.0000 | 96.2963 | 3 | 6 | 3 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | homalt | 72.7273 | 66.6667 | 80.0000 | 85.7143 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | * | 40.0000 | 33.3333 | 50.0000 | 85.7143 | 2 | 4 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | het | 57.1429 | 66.6667 | 50.0000 | 81.8182 | 2 | 1 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | * | map_l125_m0_e0 | * | 96.4836 | 95.9660 | 97.0068 | 80.1786 | 18603 | 782 | 18603 | 574 | 180 | 31.3589 | |
| jpowers-varprowl | SNP | * | map_l125_m0_e0 | het | 95.4272 | 95.2464 | 95.6088 | 82.3444 | 12062 | 602 | 12062 | 554 | 169 | 30.5054 | |
| jpowers-varprowl | SNP | * | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l125_m0_e0 | homalt | 98.5610 | 97.4523 | 99.6952 | 74.0600 | 6541 | 171 | 6541 | 20 | 11 | 55.0000 | |
| jpowers-varprowl | SNP | ti | map_l125_m0_e0 | * | 96.7602 | 95.9489 | 97.5853 | 79.1496 | 12245 | 517 | 12245 | 303 | 110 | 36.3036 | |
| jpowers-varprowl | SNP | ti | map_l125_m0_e0 | het | 95.7486 | 95.1228 | 96.3826 | 81.5656 | 7860 | 403 | 7860 | 295 | 104 | 35.2542 | |
| jpowers-varprowl | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l125_m0_e0 | homalt | 98.7168 | 97.6397 | 99.8179 | 72.4456 | 4385 | 106 | 4385 | 8 | 6 | 75.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l125_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l125_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | tv | map_l125_m0_e0 | * | 95.8974 | 95.8830 | 95.9119 | 81.8721 | 6358 | 273 | 6358 | 271 | 70 | 25.8303 | |
| jpowers-varprowl | SNP | tv | map_l125_m0_e0 | het | 94.8319 | 95.4783 | 94.1941 | 83.6101 | 4202 | 199 | 4202 | 259 | 65 | 25.0965 | |
| jpowers-varprowl | SNP | tv | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_l125_m0_e0 | homalt | 98.2456 | 97.0734 | 99.4465 | 76.8128 | 2156 | 65 | 2156 | 12 | 5 | 41.6667 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | * | 94.3709 | 91.9355 | 96.9388 | 89.0052 | 285 | 25 | 285 | 9 | 6 | 66.6667 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | het | 93.6170 | 91.6667 | 95.6522 | 91.4019 | 176 | 16 | 176 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | homalt | 97.3214 | 95.6140 | 99.0909 | 79.4007 | 109 | 5 | 109 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 96.6800 | 98.3871 | 95.0311 | 92.5047 | 305 | 5 | 306 | 16 | 2 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 95.4250 | 97.3958 | 93.5323 | 94.0708 | 187 | 5 | 188 | 13 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0784 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 85.4478 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 96.8421 | 97.8723 | 95.8333 | 94.7996 | 46 | 1 | 46 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 94.9153 | 96.5517 | 93.3333 | 95.6459 | 28 | 1 | 28 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 6 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 12 | 0 | 12 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.8723 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 97.9381 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.4252 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l125_m0_e0 | * | 76.5092 | 63.0487 | 97.2773 | 89.3850 | 12222 | 7163 | 12219 | 342 | 29 | 8.4795 | |
| jmaeng-gatk | SNP | * | map_l125_m0_e0 | het | 79.8036 | 68.1775 | 96.2100 | 91.1308 | 8634 | 4030 | 8631 | 340 | 27 | 7.9412 | |