PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58701-58750 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m0_e0 | * | 88.0000 | 91.6667 | 84.6154 | 98.9185 | 11 | 1 | 11 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 98.4743 | 9 | 0 | 9 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.5842 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l125_m0_e0 | * | 75.4933 | 61.9967 | 96.5015 | 90.4918 | 4111 | 2520 | 4110 | 149 | 7 | 4.6980 | |
| jmaeng-gatk | SNP | tv | map_l125_m0_e0 | het | 78.5795 | 66.8939 | 95.2119 | 92.0071 | 2944 | 1457 | 2943 | 148 | 6 | 4.0541 | |
| jmaeng-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 98.3051 | 2 | 7 | 2 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l125_m0_e0 | homalt | 68.7924 | 52.4538 | 99.9142 | 80.5764 | 1165 | 1056 | 1165 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m0_e0 | * | 98.6208 | 97.4926 | 99.7755 | 64.1831 | 12442 | 320 | 12442 | 28 | 12 | 42.8571 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m0_e0 | het | 98.0426 | 96.3815 | 99.7620 | 61.0832 | 7964 | 299 | 7964 | 19 | 3 | 15.7895 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.0000 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l125_m0_e0 | homalt | 99.6656 | 99.5324 | 99.7991 | 68.6301 | 4470 | 21 | 4470 | 9 | 9 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | * | 98.4887 | 97.3006 | 99.7063 | 64.1567 | 6452 | 179 | 6450 | 19 | 4 | 21.0526 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | het | 97.8147 | 96.1145 | 99.5761 | 59.9585 | 4230 | 171 | 4228 | 18 | 3 | 16.6667 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.8750 | 9 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | homalt | 99.7971 | 99.6398 | 99.9548 | 70.1295 | 2213 | 8 | 2213 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.2143 | 0 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.0566 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.6190 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.3684 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 91.6667 | 91.6667 | 91.6667 | 89.5652 | 11 | 1 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m0_e0 | het | 88.8889 | 88.8889 | 88.8889 | 88.4615 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l125_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l125_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | map_l125_m0_e0 | * | 98.5751 | 97.4258 | 99.7517 | 64.2305 | 18886 | 499 | 18884 | 47 | 16 | 34.0426 | |
| ltrigg-rtg1 | SNP | * | map_l125_m0_e0 | het | 97.9634 | 96.2887 | 99.6974 | 60.6999 | 12194 | 470 | 12192 | 37 | 6 | 16.2162 | |
| ltrigg-rtg1 | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.8750 | 9 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l125_m0_e0 | homalt | 99.7091 | 99.5679 | 99.8506 | 69.2643 | 6683 | 29 | 6683 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m0_e0 | * | 96.7585 | 94.6712 | 98.9399 | 82.0279 | 835 | 47 | 840 | 9 | 1 | 11.1111 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m0_e0 | het | 95.8851 | 93.1857 | 98.7455 | 80.3036 | 547 | 40 | 551 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 96.7742 | 10 | 1 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l125_m0_e0 | homalt | 98.5803 | 97.8873 | 99.2832 | 81.1995 | 278 | 6 | 277 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m0_e0 | * | 44.4444 | 33.3333 | 66.6667 | 88.0000 | 2 | 4 | 2 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m0_e0 | het | 40.0000 | 33.3333 | 50.0000 | 81.8182 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 88.8889 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m0_e0 | * | 96.0396 | 93.8710 | 98.3108 | 82.6495 | 291 | 19 | 291 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m0_e0 | het | 94.2838 | 90.1042 | 98.8701 | 76.9531 | 173 | 19 | 175 | 2 | 0 | 0.0000 | |