PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58501-58550 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.4576 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.9899 | 99.3243 | 98.6577 | 87.1330 | 147 | 1 | 147 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | map_l125_m0_e0 | * | 97.5866 | 98.4127 | 96.7742 | 90.0652 | 868 | 14 | 870 | 29 | 6 | 20.6897 | |
| bgallagher-sentieon | INDEL | * | map_l125_m0_e0 | het | 97.0529 | 97.9557 | 96.1667 | 90.6074 | 575 | 12 | 577 | 23 | 2 | 8.6957 | |
| bgallagher-sentieon | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.9541 | 11 | 0 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l125_m0_e0 | homalt | 98.6014 | 99.2958 | 97.9167 | 88.2112 | 282 | 2 | 282 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | INDEL | C16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m0_e0 | * | 85.7143 | 100.0000 | 75.0000 | 97.3422 | 6 | 0 | 6 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 97.1831 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0392 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 96.9298 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 96.7836 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6190 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 92.4426 | 88.7097 | 96.5035 | 91.8681 | 275 | 35 | 276 | 10 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 89.6323 | 85.4167 | 94.2857 | 93.1800 | 164 | 28 | 165 | 10 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 4 | 0 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 96.8326 | 93.8596 | 100.0000 | 87.1239 | 107 | 7 | 107 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m0_e0 | * | 36.2073 | 22.1125 | 99.8585 | 94.7728 | 2822 | 9940 | 2822 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l125_m0_e0 | het | 39.3510 | 24.5068 | 99.8029 | 95.3774 | 2025 | 6238 | 2025 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l125_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 97.2222 | 1 | 7 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m0_e0 | homalt | 30.1116 | 17.7243 | 100.0000 | 92.1453 | 796 | 3695 | 796 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | * | 76.9231 | 83.3333 | 71.4286 | 97.2763 | 5 | 1 | 5 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | het | 57.1429 | 66.6667 | 50.0000 | 97.1631 | 2 | 1 | 2 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.1308 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l125_m0_e0 | * | 35.5829 | 21.6508 | 99.8098 | 95.1193 | 4197 | 15188 | 4197 | 8 | 5 | 62.5000 | |
| asubramanian-gatk | SNP | * | map_l125_m0_e0 | het | 38.5630 | 23.9024 | 99.7364 | 95.6908 | 3027 | 9637 | 3027 | 8 | 5 | 62.5000 | |
| asubramanian-gatk | SNP | * | map_l125_m0_e0 | hetalt | 20.0000 | 11.1111 | 100.0000 | 98.1818 | 1 | 8 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l125_m0_e0 | homalt | 29.6663 | 17.4166 | 100.0000 | 92.5404 | 1169 | 5543 | 1169 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m0_e0 | * | 91.3934 | 89.9194 | 92.9167 | 91.3840 | 446 | 50 | 446 | 34 | 2 | 5.8824 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 89.7661 | 88.9855 | 90.5605 | 92.0254 | 307 | 38 | 307 | 32 | 1 | 3.1250 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8571 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m0_e0 | homalt | 95.1049 | 91.8919 | 98.5507 | 88.3051 | 136 | 12 | 136 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 94.3820 | 89.3617 | 100.0000 | 94.9766 | 42 | 5 | 43 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 96.4286 | 93.1034 | 100.0000 | 95.6240 | 27 | 2 | 27 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 90.9091 | 5 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.2197 | 10 | 2 | 10 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l125_m0_e0 | * | 34.3571 | 20.7510 | 99.7825 | 95.7011 | 1376 | 5255 | 1376 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | tv | map_l125_m0_e0 | het | 37.0699 | 22.7676 | 99.7015 | 96.2071 | 1002 | 3399 | 1002 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 20.0000 | 11.1111 | 100.0000 | 98.1818 | 1 | 8 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l125_m0_e0 | homalt | 28.7587 | 16.7942 | 100.0000 | 93.2501 | 373 | 1848 | 373 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 81.7337 | 73.3333 | 92.3077 | 96.1310 | 11 | 4 | 12 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 82.9630 | 77.7778 | 88.8889 | 95.9641 | 7 | 2 | 8 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m0_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.6522 | 4 | 2 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l125_m0_e0 | * | 91.5650 | 89.1156 | 94.1527 | 97.5656 | 786 | 96 | 789 | 49 | 3 | 6.1225 | |