PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 113 114 115 116 117 118 119 120 121 ... 1720 1721 » 5801-5850 / 86044 show all
raldana-dualsentieon	INDEL	D16_PLUS	HG002complexvar	*	96.5485	94.7048	98.4655	65.1748	1556	87	1540	24	18	75.0000
raldana-dualsentieon	INDEL	D16_PLUS	HG002complexvar	het	95.8589	93.7669	98.0464	66.4344	1038	69	803	16	11	68.7500
raldana-dualsentieon	INDEL	D16_PLUS	HG002complexvar	hetalt	96.3423	93.5223	99.3377	47.4478	231	16	450	3	3	100.0000
raldana-dualsentieon	INDEL	D16_PLUS	HG002complexvar	homalt	98.7952	99.3080	98.2877	75.4415	287	2	287	5	4	80.0000
raldana-dualsentieon	SNP	*	HG002complexvar	*	99.8769	99.7713	99.9826	18.8281	752656	1725	752511	131	47	35.8779
raldana-dualsentieon	SNP	*	HG002complexvar	het	99.8134	99.6490	99.9784	18.1564	463863	1634	463733	100	18	18.0000
raldana-dualsentieon	SNP	*	HG002complexvar	hetalt	99.5138	99.0323	100.0000	35.3684	307	3	307	0	0
raldana-dualsentieon	SNP	*	HG002complexvar	homalt	99.9794	99.9695	99.9893	19.8637	288486	88	288471	31	29	93.5484
rpoplin-dv42	INDEL	*	HG002complexvar	*	98.9923	98.6301	99.3571	63.4999	75884	1054	75884	491	440	89.6130
rpoplin-dv42	INDEL	*	HG002complexvar	het	98.9928	98.7730	99.2136	57.1040	45645	567	45545	361	319	88.3657
rpoplin-dv42	INDEL	*	HG002complexvar	hetalt	94.3915	91.0246	98.0170	68.2440	3367	332	3460	70	68	97.1429
rpoplin-dv42	INDEL	*	HG002complexvar	homalt	99.6016	99.4265	99.7773	55.5190	26872	155	26879	60	53	88.3333
rpoplin-dv42	INDEL	C16_PLUS	HG002complexvar	*		0.0000	0.0000	0.0000	0	0	0	0	0
rpoplin-dv42	INDEL	C16_PLUS	HG002complexvar	het		0.0000	0.0000	0.0000	0	0	0	0	0
rpoplin-dv42	INDEL	C16_PLUS	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
rpoplin-dv42	INDEL	C16_PLUS	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
rpoplin-dv42	INDEL	C1_5	HG002complexvar	*		71.4286		100.0000	5	2	0	0	0
rpoplin-dv42	INDEL	C1_5	HG002complexvar	het		71.4286		100.0000	5	2	0	0	0
rpoplin-dv42	INDEL	C1_5	HG002complexvar	hetalt		0.0000		100.0000	0	0	0	0	0
rpoplin-dv42	INDEL	C1_5	HG002complexvar	homalt		0.0000		100.0000	0	0	0	0	0
rpoplin-dv42	INDEL	C6_15	HG002complexvar	*	0.0000	100.0000	0.0000	0.0000	4	0	0	0	0
rpoplin-dv42	INDEL	C6_15	HG002complexvar	het	0.0000	100.0000	0.0000	0.0000	4	0	0	0	0
rpoplin-dv42	INDEL	C6_15	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
rpoplin-dv42	INDEL	C6_15	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
raldana-dualsentieon	SNP	tv	HG002complexvar	*	99.8458	99.7136	99.9784	21.7224	245447	705	245362	53	18	33.9623
raldana-dualsentieon	SNP	tv	HG002complexvar	het	99.7643	99.5575	99.9720	20.9789	150064	667	149985	42	9	21.4286
raldana-dualsentieon	SNP	tv	HG002complexvar	hetalt	99.5138	99.0323	100.0000	35.3684	307	3	307	0	0
raldana-dualsentieon	SNP	tv	HG002complexvar	homalt	99.9758	99.9632	99.9884	22.8157	95076	35	95070	11	9	81.8182
raldana-dualsentieon	INDEL	I6_15	HG002complexvar	*	97.4043	95.9098	98.9460	56.6890	4596	196	4600	49	48	97.9592
raldana-dualsentieon	INDEL	I6_15	HG002complexvar	het	98.1424	96.5605	99.7771	58.4090	2274	81	2238	5	4	80.0000
raldana-dualsentieon	INDEL	I6_15	HG002complexvar	hetalt	95.1115	90.6787	100.0000	54.5670	1109	114	1149	0	0
raldana-dualsentieon	INDEL	I6_15	HG002complexvar	homalt	98.1789	99.9176	96.4996	55.2987	1213	1	1213	44	44	100.0000
raldana-dualsentieon	SNP	ti	HG002complexvar	*	99.8917	99.7990	99.9846	17.3582	507414	1022	507354	78	29	37.1795
raldana-dualsentieon	SNP	ti	HG002complexvar	het	99.8369	99.6928	99.9815	16.7345	313799	967	313748	58	9	15.5172
raldana-dualsentieon	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	34.5048	205	2	205	0	0
raldana-dualsentieon	SNP	ti	HG002complexvar	homalt	99.9811	99.9726	99.9897	18.3281	193410	53	193401	20	20	100.0000
rpoplin-dv42	INDEL	D1_5	HG002complexvar	*	99.3660	99.1319	99.6013	57.4494	32431	284	32474	130	115	88.4615
rpoplin-dv42	INDEL	D1_5	HG002complexvar	het	99.5249	99.3402	99.7103	55.5097	20628	137	20652	60	48	80.0000
rpoplin-dv42	INDEL	D1_5	HG002complexvar	hetalt	94.1845	91.9379	96.5438	71.6833	1243	109	1257	45	44	97.7778
rpoplin-dv42	INDEL	D1_5	HG002complexvar	homalt	99.7026	99.6414	99.7639	58.4249	10560	38	10565	25	23	92.0000
rpoplin-dv42	INDEL	I1_5	HG002complexvar	*	99.3509	99.0558	99.6477	56.5141	33048	315	33091	117	105	89.7436
rpoplin-dv42	INDEL	I1_5	HG002complexvar	het	99.3340	99.1643	99.5043	57.7801	18037	152	18065	90	80	88.8889
rpoplin-dv42	INDEL	I1_5	HG002complexvar	hetalt	96.6129	94.0904	99.2745	71.2548	1624	102	1642	12	11	91.6667
rpoplin-dv42	INDEL	I1_5	HG002complexvar	homalt	99.7169	99.5464	99.8881	51.4705	13387	61	13384	15	14	93.3333
rpoplin-dv42	SNP	tv	HG002complexvar	*	99.9096	99.8615	99.9577	21.9240	245811	341	245702	104	87	83.6538
rpoplin-dv42	SNP	tv	HG002complexvar	het	99.8928	99.8249	99.9608	21.2882	150467	264	150382	59	46	77.9661
rpoplin-dv42	SNP	tv	HG002complexvar	hetalt	99.1974	99.6774	98.7220	36.2525	309	1	309	4	4	100.0000
rpoplin-dv42	SNP	tv	HG002complexvar	homalt	99.9385	99.9201	99.9569	22.8530	95035	76	95011	41	37	90.2439
rpoplin-dv42	INDEL	I6_15	HG002complexvar	*	96.7965	95.1586	98.4917	56.6586	4560	232	4571	70	64	91.4286
rpoplin-dv42	INDEL	I6_15	HG002complexvar	het	96.6823	95.9660	97.4093	58.8413	2260	95	2256	60	55	91.6667

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge