PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58001-58050 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | * | 42.8571 | 33.3333 | 60.0000 | 89.0110 | 5 | 10 | 6 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | het | 47.0588 | 33.3333 | 80.0000 | 89.3617 | 3 | 6 | 4 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | homalt | 36.3636 | 33.3333 | 40.0000 | 87.1795 | 2 | 4 | 2 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | map_l125_m0_e0 | * | 51.6639 | 38.2748 | 79.4606 | 60.5371 | 2538 | 4093 | 2534 | 655 | 574 | 87.6336 | |
| mlin-fermikit | SNP | tv | map_l125_m0_e0 | het | 48.9678 | 32.6289 | 98.0822 | 65.3700 | 1436 | 2965 | 1432 | 28 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | map_l125_m0_e0 | homalt | 55.7975 | 49.6173 | 63.7363 | 55.1608 | 1102 | 1119 | 1102 | 627 | 574 | 91.5470 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m0_e0 | * | 84.7268 | 75.8065 | 96.0265 | 93.8384 | 376 | 120 | 435 | 18 | 15 | 83.3333 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m0_e0 | het | 85.1291 | 77.3913 | 94.5860 | 94.9534 | 267 | 78 | 297 | 17 | 14 | 82.3529 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | map_l125_m0_e0 | homalt | 83.6672 | 72.2973 | 99.2806 | 87.5224 | 107 | 41 | 138 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l125_m0_e0 | * | 98.8454 | 97.9392 | 99.7685 | 71.9216 | 12499 | 263 | 12499 | 29 | 16 | 55.1724 | |
| ndellapenna-hhga | SNP | ti | map_l125_m0_e0 | het | 98.4376 | 97.2165 | 99.6897 | 74.3678 | 8033 | 230 | 8033 | 25 | 12 | 48.0000 | |
| ndellapenna-hhga | SNP | ti | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 83.7838 | 6 | 2 | 6 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l125_m0_e0 | homalt | 99.6092 | 99.3097 | 99.9104 | 66.0377 | 4460 | 31 | 4460 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C6_15 | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 59.0909 | 100.0000 | 41.9355 | 97.7714 | 12 | 0 | 13 | 18 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | het | 60.6061 | 100.0000 | 43.4783 | 97.1357 | 9 | 0 | 10 | 13 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 54.5455 | 100.0000 | 37.5000 | 98.6395 | 2 | 0 | 3 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | map_l125_m0_e0 | * | 81.0033 | 71.7687 | 92.9654 | 94.3128 | 633 | 249 | 859 | 65 | 24 | 36.9231 | |
| qzeng-custom | INDEL | * | map_l125_m0_e0 | het | 81.0999 | 72.7428 | 91.6264 | 95.2483 | 427 | 160 | 569 | 52 | 20 | 38.4615 | |
| qzeng-custom | INDEL | * | map_l125_m0_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 97.6190 | 8 | 3 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l125_m0_e0 | homalt | 80.6569 | 69.7183 | 95.6667 | 90.1704 | 198 | 86 | 287 | 13 | 4 | 30.7692 | |
| qzeng-custom | INDEL | C16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 89.1304 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 85.1852 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 94.7368 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | * | 98.6916 | 97.8284 | 99.5702 | 72.2163 | 6487 | 144 | 6487 | 28 | 13 | 46.4286 | |
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | het | 98.2879 | 97.1825 | 99.4189 | 73.8528 | 4277 | 124 | 4277 | 25 | 11 | 44.0000 | |
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 86.5385 | 7 | 2 | 7 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | homalt | 99.5256 | 99.1896 | 99.8640 | 68.2316 | 2203 | 18 | 2203 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.6743 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.6350 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | map_l125_m0_e0 | * | 62.5473 | 53.3333 | 75.6098 | 92.9188 | 8 | 7 | 31 | 10 | 1 | 10.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m0_e0 | het | 64.4258 | 55.5556 | 76.6667 | 93.2584 | 5 | 4 | 23 | 7 | 1 | 14.2857 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.9697 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l125_m0_e0 | homalt | 58.3333 | 50.0000 | 70.0000 | 90.0990 | 3 | 3 | 7 | 3 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | map_l125_m0_e0 | * | 76.6106 | 63.8536 | 95.7374 | 88.8132 | 8149 | 4613 | 8108 | 361 | 304 | 84.2105 | |
| qzeng-custom | SNP | ti | map_l125_m0_e0 | het | 76.7738 | 64.8796 | 94.0081 | 91.3630 | 5361 | 2902 | 5350 | 341 | 285 | 83.5777 | |