PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57851-57900 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m0_e0 | * | 76.9231 | 66.6667 | 90.9091 | 95.7692 | 10 | 5 | 10 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 55.5556 | 83.3333 | 96.4072 | 5 | 4 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 92.9577 | 5 | 1 | 5 | 0 | 0 | ||
| jlack-gatk | SNP | * | map_l125_m0_e0 | * | 94.5944 | 98.3647 | 91.1024 | 82.9942 | 19068 | 317 | 19065 | 1862 | 148 | 7.9484 | |
| jlack-gatk | SNP | * | map_l125_m0_e0 | het | 92.5432 | 98.6576 | 87.1425 | 85.9677 | 12494 | 170 | 12491 | 1843 | 134 | 7.2708 | |
| jlack-gatk | SNP | * | map_l125_m0_e0 | hetalt | 84.2105 | 88.8889 | 80.0000 | 90.9910 | 8 | 1 | 8 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l125_m0_e0 | homalt | 98.7740 | 97.8248 | 99.7418 | 68.3464 | 6566 | 146 | 6566 | 17 | 12 | 70.5882 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 94.8813 | 98.3871 | 91.6168 | 91.9265 | 305 | 5 | 306 | 28 | 2 | 7.1429 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 92.8334 | 97.3958 | 88.6792 | 93.3977 | 187 | 5 | 188 | 24 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 4 | 0 | 4 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.2759 | 100.0000 | 96.6102 | 85.5037 | 114 | 0 | 114 | 4 | 2 | 50.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 82.7586 | 80.0000 | 85.7143 | 96.2466 | 12 | 3 | 12 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 70.5882 | 66.6667 | 75.0000 | 96.9582 | 6 | 3 | 6 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l125_m0_e0 | * | 97.8989 | 97.7324 | 98.0660 | 88.3592 | 862 | 20 | 862 | 17 | 6 | 35.2941 | |
| jli-custom | INDEL | * | map_l125_m0_e0 | het | 97.6068 | 97.2743 | 97.9417 | 88.6222 | 571 | 16 | 571 | 12 | 2 | 16.6667 | |
| jli-custom | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 95.7082 | 10 | 1 | 10 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l125_m0_e0 | homalt | 98.5965 | 98.9437 | 98.2517 | 86.9644 | 281 | 3 | 281 | 5 | 4 | 80.0000 | |
| jlack-gatk | SNP | tv | map_l125_m0_e0 | * | 93.0649 | 98.2657 | 88.3869 | 84.2156 | 6516 | 115 | 6515 | 856 | 54 | 6.3084 | |
| jlack-gatk | SNP | tv | map_l125_m0_e0 | het | 90.4803 | 98.5003 | 83.6680 | 86.8150 | 4335 | 66 | 4334 | 846 | 47 | 5.5556 | |
| jlack-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 84.2105 | 88.8889 | 80.0000 | 90.9910 | 8 | 1 | 8 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l125_m0_e0 | homalt | 98.7279 | 97.8388 | 99.6332 | 70.1233 | 2173 | 48 | 2173 | 8 | 5 | 62.5000 | |
| jlack-gatk | SNP | ti | map_l125_m0_e0 | * | 95.3999 | 98.4093 | 92.5691 | 82.2522 | 12559 | 203 | 12557 | 1008 | 96 | 9.5238 | |
| jlack-gatk | SNP | ti | map_l125_m0_e0 | het | 93.6780 | 98.7414 | 89.1086 | 85.4382 | 8159 | 104 | 8157 | 997 | 87 | 8.7262 | |
| jlack-gatk | SNP | ti | map_l125_m0_e0 | hetalt | 82.3529 | 87.5000 | 77.7778 | 87.5000 | 7 | 1 | 7 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l125_m0_e0 | homalt | 98.7968 | 97.8179 | 99.7955 | 67.3853 | 4393 | 98 | 4393 | 9 | 7 | 77.7778 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 98.2906 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 98.0198 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.7143 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 99.2958 | 1 | 1 | 1 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l125_m0_e0 | * | 98.7959 | 98.3713 | 99.2242 | 70.3527 | 6523 | 108 | 6523 | 51 | 18 | 35.2941 | |
| jli-custom | SNP | tv | map_l125_m0_e0 | het | 98.4127 | 97.9096 | 98.9210 | 71.8623 | 4309 | 92 | 4309 | 47 | 14 | 29.7872 | |
| jli-custom | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.0698 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l125_m0_e0 | homalt | 99.5485 | 99.2796 | 99.8189 | 66.7820 | 2205 | 16 | 2205 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | SNP | ti | map_l125_m0_e0 | * | 98.9692 | 98.5504 | 99.3915 | 69.4510 | 12577 | 185 | 12577 | 77 | 30 | 38.9610 | |
| jli-custom | SNP | ti | map_l125_m0_e0 | het | 98.6256 | 98.1363 | 99.1199 | 71.4709 | 8109 | 154 | 8109 | 72 | 25 | 34.7222 | |
| jli-custom | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.3333 | 8 | 0 | 8 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l125_m0_e0 | homalt | 99.5980 | 99.3097 | 99.8880 | 64.8868 | 4460 | 31 | 4460 | 5 | 5 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l125_m0_e0 | * | 95.4196 | 97.8458 | 93.1109 | 92.8522 | 863 | 19 | 865 | 64 | 6 | 9.3750 | |
| jmaeng-gatk | INDEL | * | map_l125_m0_e0 | het | 94.0273 | 97.6150 | 90.6940 | 93.8779 | 573 | 14 | 575 | 59 | 2 | 3.3898 | |
| jmaeng-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 95.7082 | 10 | 1 | 10 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l125_m0_e0 | homalt | 98.4183 | 98.5915 | 98.2456 | 88.1645 | 280 | 4 | 280 | 5 | 4 | 80.0000 | |