PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57801-57850 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | C16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | * | 81.4815 | 91.6667 | 73.3333 | 97.2727 | 11 | 1 | 11 | 4 | 1 | 25.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 97.4359 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 96.0000 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 96.8750 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m0_e0 | * | 92.0739 | 98.1855 | 86.6785 | 91.0422 | 487 | 9 | 488 | 75 | 3 | 4.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 89.4716 | 98.2609 | 82.1256 | 91.8808 | 339 | 6 | 340 | 74 | 2 | 2.7027 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7099 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.6395 | 97.9730 | 99.3151 | 86.1611 | 145 | 3 | 145 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 90.0000 | 95.7447 | 84.9057 | 94.0382 | 45 | 2 | 45 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 87.5000 | 96.5517 | 80.0000 | 94.8830 | 28 | 1 | 28 | 7 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 83.3333 | 83.3333 | 83.3333 | 90.0000 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.7241 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | * | 99.1700 | 99.1102 | 99.2298 | 75.2152 | 6572 | 59 | 6571 | 51 | 7 | 13.7255 | |
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | het | 99.0220 | 98.9321 | 99.1120 | 76.4302 | 4354 | 47 | 4353 | 39 | 3 | 7.6923 | |
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.2459 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | homalt | 99.4597 | 99.4597 | 99.4597 | 72.3171 | 2209 | 12 | 2209 | 12 | 4 | 33.3333 | |
| jlack-gatk | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | * | map_l125_m0_e0 | * | 98.0793 | 98.2993 | 97.8604 | 87.9462 | 867 | 15 | 869 | 19 | 5 | 26.3158 | |
| hfeng-pmm3 | INDEL | * | map_l125_m0_e0 | het | 97.7062 | 97.7853 | 97.6271 | 88.4968 | 574 | 13 | 576 | 14 | 2 | 14.2857 | |
| hfeng-pmm3 | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0893 | 11 | 0 | 11 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l125_m0_e0 | homalt | 98.7741 | 99.2958 | 98.2578 | 85.7498 | 282 | 2 | 282 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | * | map_l125_m0_e0 | * | 99.0092 | 99.2468 | 98.7728 | 76.6565 | 19239 | 146 | 19236 | 239 | 30 | 12.5523 | |
| hfeng-pmm2 | SNP | * | map_l125_m0_e0 | het | 98.6818 | 99.0287 | 98.3373 | 78.8543 | 12541 | 123 | 12538 | 212 | 20 | 9.4340 | |
| hfeng-pmm2 | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l125_m0_e0 | homalt | 99.6276 | 99.6573 | 99.5980 | 70.8911 | 6689 | 23 | 6689 | 27 | 10 | 37.0370 | |
| hfeng-pmm2 | SNP | ti | map_l125_m0_e0 | * | 99.1282 | 99.3496 | 98.9077 | 76.2142 | 12679 | 83 | 12677 | 140 | 17 | 12.1429 | |
| hfeng-pmm2 | SNP | ti | map_l125_m0_e0 | het | 98.8238 | 99.1529 | 98.4969 | 78.6095 | 8193 | 70 | 8191 | 125 | 11 | 8.8000 | |
| hfeng-pmm2 | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l125_m0_e0 | homalt | 99.6883 | 99.7105 | 99.6661 | 69.9826 | 4478 | 13 | 4478 | 15 | 6 | 40.0000 | |
| hfeng-pmm2 | SNP | tv | map_l125_m0_e0 | * | 98.7817 | 99.0499 | 98.5149 | 77.4668 | 6568 | 63 | 6567 | 99 | 13 | 13.1313 | |
| hfeng-pmm2 | SNP | tv | map_l125_m0_e0 | het | 98.4153 | 98.7957 | 98.0379 | 79.2988 | 4348 | 53 | 4347 | 87 | 9 | 10.3448 | |
| hfeng-pmm2 | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l125_m0_e0 | homalt | 99.5050 | 99.5498 | 99.4602 | 72.5691 | 2211 | 10 | 2211 | 12 | 4 | 33.3333 | |
| hfeng-pmm3 | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||