PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57701-57750 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.4472 | 91.7526 | 87.2549 | 95.2909 | 89 | 8 | 89 | 13 | 4 | 30.7692 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 89.5935 | 96.0784 | 83.9286 | 96.4602 | 49 | 2 | 47 | 9 | 4 | 44.4444 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 77.1186 | 25 | 5 | 27 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 85.7143 | 93.7500 | 78.9474 | 95.9227 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| jli-custom | SNP | * | map_l100_m2_e1 | * | 99.4761 | 99.3323 | 99.6202 | 63.1271 | 74238 | 499 | 74235 | 283 | 79 | 27.9152 | |
| jli-custom | SNP | * | map_l100_m2_e1 | het | 99.2878 | 99.1428 | 99.4333 | 64.8837 | 46496 | 402 | 46493 | 265 | 62 | 23.3962 | |
| jli-custom | SNP | * | map_l100_m2_e1 | hetalt | 98.8506 | 100.0000 | 97.7273 | 74.8571 | 43 | 0 | 43 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_l100_m2_e1 | homalt | 99.7946 | 99.6510 | 99.9387 | 59.6958 | 27699 | 97 | 27699 | 17 | 16 | 94.1176 | |
| jli-custom | SNP | tv | map_l100_m2_e1 | * | 99.4258 | 99.3157 | 99.5362 | 64.2630 | 25110 | 173 | 25109 | 117 | 30 | 25.6410 | |
| jli-custom | SNP | tv | map_l100_m2_e1 | het | 99.2181 | 99.1279 | 99.3085 | 65.9029 | 15799 | 139 | 15798 | 110 | 24 | 21.8182 | |
| jli-custom | SNP | tv | map_l100_m2_e1 | hetalt | 98.8506 | 100.0000 | 97.7273 | 74.8571 | 43 | 0 | 43 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | map_l100_m2_e1 | homalt | 99.7847 | 99.6345 | 99.9353 | 60.9647 | 9268 | 34 | 9268 | 6 | 5 | 83.3333 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | * | 86.2745 | 84.6154 | 88.0000 | 94.3694 | 22 | 4 | 22 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | het | 88.2353 | 83.3333 | 93.7500 | 91.1111 | 15 | 3 | 15 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.0000 | 2 | 1 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.0711 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e1 | * | 99.2452 | 98.9247 | 99.5677 | 82.8600 | 1380 | 15 | 1382 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e1 | het | 99.1307 | 98.5185 | 99.7506 | 83.4469 | 798 | 12 | 800 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 89.6552 | 42 | 3 | 42 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.6310 | 100.0000 | 99.2647 | 80.8922 | 540 | 0 | 540 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e1 | * | 95.0673 | 91.3793 | 99.0654 | 85.9580 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 93.1034 | 88.5246 | 98.1818 | 85.9694 | 54 | 7 | 54 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 97.6744 | 95.4545 | 100.0000 | 82.5000 | 21 | 1 | 21 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.8750 | 93.9394 | 100.0000 | 87.6000 | 31 | 2 | 31 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | * | 96.8848 | 96.0000 | 97.7860 | 84.7838 | 264 | 11 | 265 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 96.6925 | 97.0370 | 96.3504 | 87.3733 | 131 | 4 | 132 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.7746 | 93.1507 | 98.5507 | 73.5632 | 68 | 5 | 68 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 85.0575 | 65 | 2 | 65 | 0 | 0 | ||
| jli-custom | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | * | 90.5263 | 88.6598 | 92.4731 | 93.0337 | 86 | 11 | 86 | 7 | 2 | 28.5714 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 90.9254 | 90.1961 | 91.6667 | 94.4380 | 46 | 5 | 44 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 75.4545 | 25 | 5 | 27 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 88.2353 | 93.7500 | 83.3333 | 95.0276 | 15 | 1 | 15 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e1 | * | 98.6576 | 98.5044 | 98.8114 | 83.1328 | 1910 | 29 | 1912 | 23 | 8 | 34.7826 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e1 | het | 98.6620 | 98.8170 | 98.5075 | 82.6685 | 1253 | 15 | 1254 | 19 | 5 | 26.3158 | |