PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57451-57500 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | C1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | map_l100_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e1 | * | 98.0898 | 97.9887 | 98.1912 | 83.7299 | 1900 | 39 | 1900 | 35 | 13 | 37.1429 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e1 | het | 98.0355 | 98.3438 | 97.7291 | 83.2875 | 1247 | 21 | 1248 | 29 | 8 | 27.5862 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 84.4191 | 74.5098 | 97.3684 | 91.9149 | 38 | 13 | 37 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.1935 | 99.1935 | 99.1935 | 83.6066 | 615 | 5 | 615 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | * | 90.1715 | 88.0000 | 92.4528 | 85.4555 | 242 | 33 | 245 | 20 | 12 | 60.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | het | 94.2427 | 98.5185 | 90.3226 | 87.0184 | 133 | 2 | 140 | 15 | 10 | 66.6667 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 74.8782 | 61.6438 | 95.3488 | 77.1277 | 45 | 28 | 41 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | homalt | 95.5224 | 95.5224 | 95.5224 | 84.7727 | 64 | 3 | 64 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | * | 79.6555 | 76.2887 | 83.3333 | 87.4652 | 74 | 23 | 75 | 15 | 11 | 73.3333 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | het | 84.8918 | 92.1569 | 78.6885 | 88.0626 | 47 | 4 | 48 | 13 | 10 | 76.9231 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 65.2174 | 50.0000 | 93.7500 | 72.8814 | 15 | 15 | 15 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 82.7586 | 75.0000 | 92.3077 | 91.2162 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e1 | * | 97.3869 | 97.1778 | 97.5968 | 97.6235 | 3650 | 106 | 3655 | 90 | 41 | 45.5556 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e1 | het | 97.4787 | 97.9513 | 97.0105 | 84.5478 | 2295 | 48 | 2304 | 71 | 31 | 43.6620 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e1 | hetalt | 83.0700 | 72.7273 | 96.8421 | 89.2290 | 96 | 36 | 92 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e1 | homalt | 98.5133 | 98.2826 | 98.7451 | 83.8095 | 1259 | 22 | 1259 | 16 | 9 | 56.2500 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e1 | * | 85.4353 | 75.2688 | 98.7770 | 84.4363 | 1050 | 345 | 1050 | 13 | 5 | 38.4615 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e1 | het | 89.3559 | 81.3580 | 99.0977 | 86.3869 | 659 | 151 | 659 | 6 | 1 | 16.6667 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 83.9506 | 75.5556 | 94.4444 | 88.0795 | 34 | 11 | 34 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e1 | homalt | 79.1574 | 66.1111 | 98.6188 | 77.9671 | 357 | 183 | 357 | 5 | 2 | 40.0000 | |
| ckim-isaac | SNP | ti | map_l100_m2_e1 | * | 80.3859 | 67.2749 | 99.8441 | 64.2491 | 33291 | 16194 | 33295 | 52 | 10 | 19.2308 | |
| ckim-isaac | SNP | ti | map_l100_m2_e1 | het | 83.1462 | 71.2597 | 99.7920 | 67.1300 | 22062 | 8898 | 22066 | 46 | 4 | 8.6957 | |
| ckim-isaac | SNP | ti | map_l100_m2_e1 | hetalt | 76.0000 | 61.2903 | 100.0000 | 74.3243 | 19 | 12 | 19 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l100_m2_e1 | homalt | 75.4653 | 60.6143 | 99.9554 | 56.7172 | 11210 | 7284 | 11210 | 5 | 5 | 100.0000 | |
| ckim-isaac | SNP | tv | map_l100_m2_e1 | * | 75.8227 | 61.1518 | 99.7549 | 67.3250 | 15461 | 9822 | 15464 | 38 | 12 | 31.5789 | |
| ckim-isaac | SNP | tv | map_l100_m2_e1 | het | 79.3382 | 65.8928 | 99.6774 | 69.5352 | 10502 | 5436 | 10505 | 34 | 8 | 23.5294 | |
| ckim-isaac | SNP | tv | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 76.6355 | 25 | 18 | 25 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m2_e1 | homalt | 69.3075 | 53.0424 | 99.9595 | 61.1858 | 4934 | 4368 | 4934 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e1 | * | 97.1482 | 96.5389 | 97.7652 | 89.4752 | 3626 | 130 | 3631 | 83 | 16 | 19.2771 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e1 | het | 96.2442 | 95.6466 | 96.8494 | 90.9830 | 2241 | 102 | 2244 | 73 | 11 | 15.0685 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e1 | hetalt | 92.6829 | 86.3636 | 100.0000 | 87.5536 | 114 | 18 | 116 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l100_m2_e1 | homalt | 99.2194 | 99.2194 | 99.2194 | 85.2079 | 1271 | 10 | 1271 | 10 | 5 | 50.0000 | |
| ckim-vqsr | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | map_l100_m2_e1 | * | 78.8815 | 65.2060 | 99.8157 | 65.2814 | 48733 | 26004 | 48740 | 90 | 22 | 24.4444 | |
| ckim-isaac | SNP | * | map_l100_m2_e1 | het | 81.8788 | 69.4358 | 99.7550 | 67.9468 | 32564 | 14334 | 32571 | 80 | 12 | 15.0000 | |
| ckim-isaac | SNP | * | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 76.6355 | 25 | 18 | 25 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l100_m2_e1 | homalt | 73.4703 | 58.0803 | 99.9567 | 58.1884 | 16144 | 11652 | 16144 | 7 | 7 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_l100_m2_e1 | * | 0.0000 | 100.0000 | 0 | 26 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l100_m2_e1 | het | 0.0000 | 100.0000 | 0 | 18 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | map_l100_m2_e1 | * | 56.4417 | 39.6552 | 97.8723 | 91.2639 | 46 | 70 | 46 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l100_m2_e1 | het | 59.0641 | 42.6230 | 96.1538 | 92.8767 | 26 | 35 | 25 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 70.5882 | 54.5455 | 100.0000 | 84.7059 | 12 | 10 | 13 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l100_m2_e1 | homalt | 39.0244 | 24.2424 | 100.0000 | 90.9091 | 8 | 25 | 8 | 0 | 0 | ||