PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5701-5750 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | * | HG002complexvar | * | 75.2674 | 67.2243 | 85.4968 | 64.1998 | 51721 | 25217 | 55926 | 9487 | 1463 | 15.4211 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | het | 73.0648 | 65.5393 | 82.5428 | 64.5149 | 30287 | 15925 | 32942 | 6967 | 459 | 6.5882 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | hetalt | 48.8074 | 34.6851 | 82.3281 | 84.4012 | 1283 | 2416 | 1365 | 293 | 225 | 76.7918 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | homalt | 81.8252 | 74.5588 | 90.6609 | 60.0040 | 20151 | 6876 | 21619 | 2227 | 779 | 34.9798 | |
| gduggal-snapplat | INDEL | C1_5 | HG002complexvar | * | 16.6667 | 14.2857 | 20.0000 | 81.4815 | 1 | 6 | 1 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 14.2857 | 0.0000 | 84.2105 | 1 | 6 | 0 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 50.0000 | 66.6667 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | HG002complexvar | * | 72.1017 | 100.0000 | 56.3743 | 72.3480 | 4 | 0 | 482 | 373 | 150 | 40.2145 | |
| gduggal-snapvard | INDEL | C6_15 | HG002complexvar | het | 70.5584 | 100.0000 | 54.5098 | 71.9266 | 4 | 0 | 417 | 348 | 129 | 37.0690 | |
| gduggal-snapvard | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 72.2222 | 75.4768 | 0 | 0 | 65 | 25 | 21 | 84.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | HG002complexvar | * | 1.7978 | 0.9167 | 46.1538 | 59.1623 | 12 | 1297 | 216 | 252 | 147 | 58.3333 | |
| gduggal-snapvard | INDEL | I16_PLUS | HG002complexvar | het | 3.1923 | 1.6541 | 45.5157 | 59.5648 | 11 | 654 | 203 | 243 | 141 | 58.0247 | |
| gduggal-snapvard | INDEL | I16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 335 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | HG002complexvar | homalt | 0.6437 | 0.3236 | 59.0909 | 48.8372 | 1 | 308 | 13 | 9 | 6 | 66.6667 | |
| gduggal-snapvard | INDEL | I1_5 | HG002complexvar | * | 89.7354 | 89.2273 | 90.2494 | 52.3644 | 29768 | 3594 | 28665 | 3097 | 2248 | 72.5864 | |
| gduggal-snapvard | INDEL | I1_5 | HG002complexvar | het | 90.2347 | 95.7007 | 85.3594 | 58.5913 | 17407 | 782 | 17730 | 3041 | 2197 | 72.2460 | |
| gduggal-snapvard | INDEL | I1_5 | HG002complexvar | hetalt | 0.0000 | 41.9710 | 0.0000 | 0.0000 | 724 | 1001 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | HG002complexvar | homalt | 92.5606 | 86.5333 | 99.4905 | 33.4524 | 11637 | 1811 | 10935 | 56 | 51 | 91.0714 | |
| gduggal-snapvard | INDEL | I6_15 | HG002complexvar | * | 55.8350 | 49.5825 | 63.8921 | 47.3893 | 2375 | 2415 | 2794 | 1579 | 1240 | 78.5307 | |
| gduggal-snapvard | INDEL | I6_15 | HG002complexvar | het | 67.8635 | 76.9851 | 60.6744 | 48.9450 | 1813 | 542 | 2393 | 1551 | 1213 | 78.2076 | |
| gduggal-snapvard | INDEL | I6_15 | HG002complexvar | hetalt | 0.0000 | 16.5303 | 0.0000 | 0.0000 | 202 | 1020 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | HG002complexvar | homalt | 45.0525 | 29.6785 | 93.4732 | 26.9165 | 360 | 853 | 401 | 28 | 27 | 96.4286 | |
| gduggal-snapvard | INDEL | D6_15 | HG002complexvar | * | 66.6908 | 61.3353 | 73.0708 | 52.3301 | 3252 | 2050 | 3229 | 1190 | 878 | 73.7815 | |
| gduggal-snapvard | INDEL | D6_15 | HG002complexvar | het | 73.6293 | 75.8333 | 71.5498 | 53.1509 | 2366 | 754 | 2867 | 1140 | 832 | 72.9825 | |
| gduggal-snapvard | INDEL | D6_15 | HG002complexvar | hetalt | 0.0000 | 48.8648 | 0.0000 | 0.0000 | 495 | 518 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | HG002complexvar | homalt | 48.4509 | 33.4474 | 87.8641 | 42.5384 | 391 | 778 | 362 | 50 | 46 | 92.0000 | |
| gduggal-snapvard | INDEL | C1_5 | HG002complexvar | * | 81.4638 | 100.0000 | 68.7248 | 77.2577 | 7 | 0 | 3072 | 1398 | 373 | 26.6810 | |
| gduggal-snapvard | INDEL | C1_5 | HG002complexvar | het | 76.5611 | 100.0000 | 62.0235 | 78.1252 | 7 | 0 | 2213 | 1355 | 344 | 25.3875 | |
| gduggal-snapvard | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 95.2328 | 73.0263 | 0 | 0 | 859 | 43 | 29 | 67.4419 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002complexvar | * | 9.5470 | 5.2952 | 48.4536 | 72.9428 | 87 | 1556 | 94 | 100 | 53 | 53.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002complexvar | het | 12.2286 | 7.0461 | 46.2366 | 72.6872 | 78 | 1029 | 86 | 100 | 53 | 53.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.8097 | 0.0000 | 0.0000 | 2 | 245 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | HG002complexvar | homalt | 4.7297 | 2.4221 | 100.0000 | 77.7778 | 7 | 282 | 8 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | HG002complexvar | * | 89.5567 | 91.9115 | 87.3195 | 53.8184 | 30067 | 2646 | 34830 | 5058 | 3634 | 71.8466 | |
| gduggal-snapvard | INDEL | D1_5 | HG002complexvar | het | 89.8124 | 96.1325 | 84.2721 | 56.4465 | 19960 | 803 | 25510 | 4761 | 3355 | 70.4684 | |
| gduggal-snapvard | INDEL | D1_5 | HG002complexvar | hetalt | 0.0000 | 63.6095 | 0.0000 | 0.0000 | 860 | 492 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | HG002complexvar | homalt | 91.8287 | 87.2523 | 96.9117 | 42.9901 | 9247 | 1351 | 9320 | 297 | 279 | 93.9394 | |
| ndellapenna-hhga | INDEL | D1_5 | HG002complexvar | * | 97.3122 | 96.7874 | 97.8426 | 54.8110 | 31664 | 1051 | 31656 | 698 | 573 | 82.0917 | |
| ndellapenna-hhga | INDEL | D1_5 | HG002complexvar | het | 97.7232 | 97.5199 | 97.9274 | 51.5698 | 20250 | 515 | 20317 | 430 | 365 | 84.8837 | |
| ndellapenna-hhga | INDEL | D1_5 | HG002complexvar | hetalt | 79.8795 | 68.7130 | 95.3795 | 77.9155 | 929 | 423 | 867 | 42 | 39 | 92.8571 | |
| ndellapenna-hhga | INDEL | D1_5 | HG002complexvar | homalt | 98.4078 | 98.9338 | 97.8875 | 56.5863 | 10485 | 113 | 10472 | 226 | 169 | 74.7788 | |
| ndellapenna-hhga | INDEL | I1_5 | HG002complexvar | * | 98.8448 | 98.3844 | 99.3095 | 53.7677 | 32824 | 539 | 32792 | 228 | 116 | 50.8772 | |
| ndellapenna-hhga | INDEL | I1_5 | HG002complexvar | het | 98.8489 | 98.2847 | 99.4197 | 54.6026 | 17877 | 312 | 17818 | 104 | 33 | 31.7308 | |
| ndellapenna-hhga | INDEL | I1_5 | HG002complexvar | hetalt | 96.3808 | 94.4380 | 98.4052 | 70.6127 | 1630 | 96 | 1666 | 27 | 26 | 96.2963 | |
| ndellapenna-hhga | INDEL | I1_5 | HG002complexvar | homalt | 99.1510 | 99.0259 | 99.2764 | 48.8027 | 13317 | 131 | 13308 | 97 | 57 | 58.7629 | |
| ndellapenna-hhga | INDEL | I6_15 | HG002complexvar | * | 96.1681 | 95.0125 | 97.3521 | 56.1640 | 4553 | 239 | 4559 | 124 | 74 | 59.6774 | |
| ndellapenna-hhga | INDEL | I6_15 | HG002complexvar | het | 96.5036 | 95.1592 | 97.8864 | 58.1922 | 2241 | 114 | 2223 | 48 | 17 | 35.4167 | |