PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57401-57450 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | * | 76.5753 | 70.9091 | 83.2258 | 83.8877 | 195 | 80 | 258 | 52 | 48 | 92.3077 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | het | 91.2869 | 91.1111 | 91.4634 | 82.8452 | 123 | 12 | 150 | 14 | 13 | 92.8571 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 35.9551 | 21.9178 | 100.0000 | 84.8780 | 16 | 57 | 31 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | homalt | 74.3512 | 83.5821 | 66.9565 | 84.9279 | 56 | 11 | 77 | 38 | 35 | 92.1053 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 89.4737 | 95.5582 | 0 | 0 | 68 | 8 | 3 | 37.5000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 87.1795 | 95.5017 | 0 | 0 | 34 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.4436 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 90.9091 | 94.3782 | 0 | 0 | 30 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.4545 | 95.4545 | 95.4545 | 84.7222 | 21 | 1 | 21 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | homalt | 93.7500 | 90.9091 | 96.7742 | 86.6379 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l100_m2_e1 | * | 99.5464 | 99.2547 | 99.8398 | 64.7282 | 74180 | 557 | 74181 | 119 | 50 | 42.0168 | |
| egarrison-hhga | SNP | * | map_l100_m2_e1 | het | 99.3694 | 98.9552 | 99.7871 | 65.4429 | 46408 | 490 | 46409 | 99 | 31 | 31.3131 | |
| egarrison-hhga | SNP | * | map_l100_m2_e1 | hetalt | 95.2381 | 93.0233 | 97.5610 | 79.3970 | 40 | 3 | 40 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l100_m2_e1 | homalt | 99.8506 | 99.7698 | 99.9315 | 63.4220 | 27732 | 64 | 27732 | 19 | 18 | 94.7368 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e1 | * | 94.4339 | 93.4771 | 95.4104 | 92.6391 | 3511 | 245 | 5010 | 241 | 187 | 77.5934 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e1 | het | 96.0818 | 95.5186 | 96.6518 | 82.4853 | 2238 | 105 | 3031 | 105 | 69 | 65.7143 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e1 | hetalt | 46.6253 | 31.0606 | 93.4579 | 92.4542 | 41 | 91 | 100 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e1 | homalt | 94.8575 | 96.1749 | 93.5757 | 84.5669 | 1232 | 49 | 1879 | 129 | 113 | 87.5969 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | * | 81.6327 | 76.9231 | 86.9565 | 90.0433 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | het | 85.7143 | 83.3333 | 88.2353 | 88.5906 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.4615 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 50.0000 | 40.0000 | 66.6667 | 94.6429 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e1 | * | 99.4981 | 99.1892 | 99.8090 | 65.1604 | 25078 | 205 | 25078 | 48 | 19 | 39.5833 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e1 | het | 99.3132 | 98.8894 | 99.7405 | 65.3943 | 15761 | 177 | 15761 | 41 | 13 | 31.7073 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e1 | hetalt | 95.2381 | 93.0233 | 97.5610 | 79.3970 | 40 | 3 | 40 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e1 | homalt | 99.8332 | 99.7312 | 99.9354 | 64.6456 | 9277 | 25 | 9277 | 6 | 5 | 83.3333 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e1 | * | 99.5683 | 99.2846 | 99.8537 | 64.5157 | 49131 | 354 | 49132 | 72 | 32 | 44.4444 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e1 | het | 99.3984 | 98.9890 | 99.8111 | 65.4651 | 30647 | 313 | 30648 | 58 | 18 | 31.0345 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e1 | hetalt | 95.0820 | 93.5484 | 96.6667 | 78.5714 | 29 | 2 | 29 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e1 | homalt | 99.8593 | 99.7891 | 99.9296 | 62.7744 | 18455 | 39 | 18455 | 13 | 13 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e1 | * | 98.7451 | 98.7097 | 98.7805 | 84.7650 | 1377 | 18 | 1377 | 17 | 3 | 17.6471 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e1 | het | 98.5167 | 98.3951 | 98.6386 | 85.2231 | 797 | 13 | 797 | 11 | 1 | 9.0909 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 97.7778 | 97.7778 | 97.7778 | 90.3433 | 44 | 1 | 44 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.1674 | 99.2593 | 99.0758 | 83.1779 | 536 | 4 | 536 | 5 | 2 | 40.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | * | 94.6903 | 92.2414 | 97.2727 | 85.9335 | 107 | 9 | 107 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | het | 94.9153 | 91.8033 | 98.2456 | 85.9606 | 56 | 5 | 56 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 97.7273 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| eyeh-varpipe | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| egarrison-hhga | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C6_15 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||