PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 110 111 112 113 114 115 116 117 118 ... 1720 1721 » 5651-5700 / 86044 show all
ghariani-varprowl	INDEL	C16_PLUS	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	C16_PLUS	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	C1_5	HG002complexvar	*	0.0000	85.7143	0.0000	0.0000	6	1	0	0	0
ghariani-varprowl	INDEL	C1_5	HG002complexvar	het	0.0000	85.7143	0.0000	0.0000	6	1	0	0	0
ghariani-varprowl	INDEL	C1_5	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	C1_5	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	C6_15	HG002complexvar	*	0.0000	100.0000	0.0000	0.0000	4	0	0	0	0
ghariani-varprowl	INDEL	C6_15	HG002complexvar	het	0.0000	100.0000	0.0000	0.0000	4	0	0	0	0
ghariani-varprowl	INDEL	C6_15	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	C6_15	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	HG002complexvar	*	77.2722	74.0718	80.7617	66.1856	1217	426	1230	293	276	94.1980
ghariani-varprowl	INDEL	D16_PLUS	HG002complexvar	het	84.6320	90.1536	79.7478	64.8768	998	109	1012	257	243	94.5525
ghariani-varprowl	INDEL	D16_PLUS	HG002complexvar	hetalt	0.0000	0.8097	0.0000	0.0000	2	245	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	HG002complexvar	homalt	80.0982	75.0865	85.8268	71.4927	217	72	218	36	33	91.6667
ghariani-varprowl	INDEL	*	HG002complexvar	*	91.5434	91.6620	91.4251	69.4318	70522	6415	70273	6591	5330	80.8679
ghariani-varprowl	INDEL	*	HG002complexvar	het	93.2466	97.4941	89.3538	59.7893	45053	1158	45020	5364	4472	83.3706
ghariani-varprowl	INDEL	*	HG002complexvar	hetalt	0.0000	3.1089	0.0000	0.0000	115	3584	0	0	0
ghariani-varprowl	INDEL	*	HG002complexvar	homalt	94.5817	93.8099	95.3663	48.0723	25354	1673	25253	1227	858	69.9267
gduggal-snapvard	SNP	*	HG002complexvar	*	97.8941	96.7741	99.0404	21.0357	730048	24336	708362	6863	2537	36.9663
gduggal-snapvard	SNP	*	HG002complexvar	het	97.7612	96.9682	98.5672	22.3358	451386	14113	439324	6386	2268	35.5152
gduggal-snapvard	SNP	*	HG002complexvar	hetalt	0.0000	1.9355	0.0000	0.0000	6	304	0	0	0
gduggal-snapvard	SNP	*	HG002complexvar	homalt	98.1658	96.5628	99.8230	18.7873	278656	9919	269038	477	269	56.3941
gduggal-snapvard	SNP	tv	HG002complexvar	*	97.7872	96.7504	98.8464	23.7234	238156	7999	233057	2720	1012	37.2059
gduggal-snapvard	SNP	tv	HG002complexvar	het	97.6940	97.1254	98.2693	25.4121	146401	4333	143709	2531	919	36.3098
gduggal-snapvard	SNP	tv	HG002complexvar	hetalt	0.0000	1.9355	0.0000	0.0000	6	304	0	0	0
gduggal-snapvard	SNP	tv	HG002complexvar	homalt	98.0989	96.4652	99.7889	20.7946	91749	3362	89348	189	93	49.2063
gduggal-snapplat	INDEL	C16_PLUS	HG002complexvar	*		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C16_PLUS	HG002complexvar	het		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C16_PLUS	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C16_PLUS	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	D16_PLUS	HG002complexvar	*		0.0000	0.0000	0.0000	0	1643	0	0	0
gduggal-snapplat	INDEL	D16_PLUS	HG002complexvar	het		0.0000	0.0000	0.0000	0	1107	0	0	0
gduggal-snapplat	INDEL	D16_PLUS	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	247	0	0	0
gduggal-snapplat	INDEL	D16_PLUS	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	289	0	0	0
gduggal-snapplat	INDEL	D1_5	HG002complexvar	*	83.2560	78.3158	88.8615	63.4989	25621	7094	29885	3746	907	24.2125
gduggal-snapplat	INDEL	D1_5	HG002complexvar	het	82.2897	77.5921	87.5928	61.7499	16112	4653	18878	2674	302	11.2939
gduggal-snapplat	INDEL	D1_5	HG002complexvar	hetalt	53.4943	40.5325	78.6432	87.0210	548	804	626	170	133	78.2353
gduggal-snapplat	INDEL	D1_5	HG002complexvar	homalt	88.1224	84.5537	92.0057	61.9576	8961	1637	10381	902	472	52.3282
gduggal-snapplat	INDEL	D6_15	HG002complexvar	*	44.3210	31.1015	77.0858	66.5750	1649	3653	1312	390	129	33.0769
gduggal-snapplat	INDEL	D6_15	HG002complexvar	het	38.9411	26.8910	70.5590	64.8625	839	2281	568	237	24	10.1266
gduggal-snapplat	INDEL	D6_15	HG002complexvar	hetalt	48.9308	33.8598	88.1797	67.9303	343	670	373	50	39	78.0000
gduggal-snapplat	INDEL	D6_15	HG002complexvar	homalt	52.8983	39.9487	78.2700	68.0162	467	702	371	103	66	64.0777
gduggal-snapplat	INDEL	I16_PLUS	HG002complexvar	*		0.0000	0.0000	0.0000	0	1309	0	0	0
gduggal-snapplat	INDEL	I16_PLUS	HG002complexvar	het		0.0000	0.0000	0.0000	0	665	0	0	0
gduggal-snapplat	INDEL	I16_PLUS	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	335	0	0	0
gduggal-snapplat	INDEL	I16_PLUS	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	309	0	0	0
gduggal-snapplat	INDEL	C6_15	HG002complexvar	*	0.0000	50.0000	0.0000	0.0000	2	2	0	0	0
gduggal-snapplat	INDEL	C6_15	HG002complexvar	het	0.0000	50.0000	0.0000	0.0000	2	2	0	0	0
gduggal-snapplat	INDEL	C6_15	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapplat	INDEL	C6_15	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge