PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56501-56550 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | * | 58.3125 | 51.5464 | 67.1233 | 96.0879 | 50 | 47 | 49 | 24 | 21 | 87.5000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | het | 69.5652 | 78.4314 | 62.5000 | 95.0349 | 40 | 11 | 40 | 24 | 21 | 87.5000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 3.3333 | 0.0000 | 0.0000 | 1 | 29 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 72.0000 | 56.2500 | 100.0000 | 98.4402 | 9 | 7 | 9 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | * | 88.4662 | 80.9714 | 97.4899 | 81.7669 | 20472 | 4811 | 20468 | 527 | 16 | 3.0361 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | het | 91.5298 | 87.1628 | 96.3575 | 84.5264 | 13892 | 2046 | 13888 | 525 | 14 | 2.6667 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 81.0811 | 69.7674 | 96.7742 | 90.1899 | 30 | 13 | 30 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | homalt | 82.6342 | 70.4150 | 99.9847 | 69.7916 | 6550 | 2752 | 6550 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e1 | * | 65.1881 | 61.0909 | 69.8745 | 86.3116 | 168 | 107 | 167 | 72 | 69 | 95.8333 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e1 | het | 73.3945 | 88.8889 | 62.5000 | 87.0095 | 120 | 15 | 120 | 72 | 69 | 95.8333 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 1.3699 | 0.0000 | 0.0000 | 1 | 72 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e1 | homalt | 82.4561 | 70.1493 | 100.0000 | 82.4627 | 47 | 20 | 47 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | * | 60.4651 | 50.0000 | 76.4706 | 84.9558 | 13 | 13 | 13 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | het | 70.5882 | 66.6667 | 75.0000 | 83.1579 | 12 | 6 | 12 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 33.3333 | 20.0000 | 100.0000 | 94.4444 | 1 | 4 | 1 | 0 | 0 | ||
| jpowers-varprowl | SNP | * | map_l100_m2_e1 | het | 97.3347 | 97.1001 | 97.5704 | 74.0696 | 45538 | 1360 | 45540 | 1134 | 265 | 23.3686 | |
| jpowers-varprowl | SNP | * | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l100_m2_e1 | homalt | 99.3431 | 99.0286 | 99.6597 | 66.2636 | 27526 | 270 | 27526 | 94 | 69 | 73.4043 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e1 | * | 98.2264 | 97.7569 | 98.7004 | 70.3802 | 48375 | 1110 | 48377 | 637 | 193 | 30.2983 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e1 | het | 97.5492 | 97.0640 | 98.0394 | 72.8908 | 30051 | 909 | 30053 | 601 | 165 | 27.4542 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l100_m2_e1 | homalt | 99.4410 | 99.0808 | 99.8039 | 64.9625 | 18324 | 170 | 18324 | 36 | 28 | 77.7778 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e1 | * | 67.0051 | 56.8966 | 81.4815 | 86.6776 | 66 | 50 | 66 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e1 | het | 71.7949 | 68.8525 | 75.0000 | 88.3090 | 42 | 19 | 42 | 14 | 14 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 22 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e1 | homalt | 82.7586 | 72.7273 | 96.0000 | 80.6202 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | * | map_l100_m2_e1 | * | 98.0534 | 97.7615 | 98.3471 | 71.6291 | 73064 | 1673 | 73066 | 1228 | 334 | 27.1987 | |
| jpowers-varprowl | SNP | tv | map_l100_m2_e1 | * | 97.6564 | 97.6506 | 97.6622 | 73.7732 | 24689 | 594 | 24689 | 591 | 141 | 23.8579 | |
| jpowers-varprowl | SNP | tv | map_l100_m2_e1 | het | 96.9210 | 97.1703 | 96.6729 | 76.0613 | 15487 | 451 | 15487 | 533 | 100 | 18.7617 | |
| jpowers-varprowl | SNP | tv | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_l100_m2_e1 | homalt | 99.1488 | 98.9250 | 99.3737 | 68.5771 | 9202 | 100 | 9202 | 58 | 41 | 70.6897 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e1 | * | 93.7786 | 91.3262 | 96.3664 | 84.5822 | 1274 | 121 | 1273 | 48 | 35 | 72.9167 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e1 | het | 93.9532 | 93.0864 | 94.8363 | 87.4783 | 754 | 56 | 753 | 41 | 29 | 70.7317 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 45 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e1 | homalt | 97.4695 | 96.2963 | 98.6717 | 76.3359 | 520 | 20 | 520 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 97.2222 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 94.4444 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e1 | * | 97.3272 | 95.5005 | 99.2250 | 80.3823 | 3587 | 169 | 3585 | 28 | 7 | 25.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e1 | het | 96.7209 | 94.4516 | 99.1019 | 77.2848 | 2213 | 130 | 2207 | 20 | 2 | 10.0000 | |