PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56401-56450 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 22 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | homalt | 82.7586 | 72.7273 | 96.0000 | 81.4815 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | * | 98.3564 | 99.0460 | 97.6764 | 72.0101 | 74024 | 713 | 74027 | 1761 | 324 | 18.3986 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | het | 97.8415 | 99.1599 | 96.5577 | 75.0527 | 46504 | 394 | 46507 | 1658 | 256 | 15.4403 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | homalt | 99.3161 | 99.0071 | 99.6271 | 64.4501 | 27520 | 276 | 27520 | 103 | 68 | 66.0194 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | * | 67.6145 | 65.4545 | 69.9219 | 89.0552 | 180 | 95 | 179 | 77 | 71 | 92.2078 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | het | 76.7442 | 97.7778 | 63.1579 | 89.8936 | 132 | 3 | 132 | 77 | 71 | 92.2078 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 1.3699 | 0.0000 | 0.0000 | 1 | 72 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | homalt | 82.4561 | 70.1493 | 100.0000 | 82.6568 | 47 | 20 | 47 | 0 | 0 | ||
| ghariani-varprowl | SNP | ti | map_l100_m2_e1 | * | 98.6004 | 99.0118 | 98.1924 | 70.8832 | 48996 | 489 | 48998 | 902 | 186 | 20.6208 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e1 | het | 98.1632 | 99.0762 | 97.2668 | 74.0488 | 30674 | 286 | 30676 | 862 | 158 | 18.3295 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l100_m2_e1 | homalt | 99.4248 | 99.0700 | 99.7822 | 63.1662 | 18322 | 172 | 18322 | 40 | 28 | 70.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | * | 93.7587 | 94.2652 | 93.2576 | 87.8356 | 1315 | 80 | 1314 | 95 | 35 | 36.8421 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | het | 94.1953 | 98.2716 | 90.4437 | 90.5024 | 796 | 14 | 795 | 84 | 29 | 34.5238 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 45 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | homalt | 97.0093 | 96.1111 | 97.9245 | 77.2337 | 519 | 21 | 519 | 11 | 6 | 54.5455 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | * | 72.3005 | 66.3793 | 79.3814 | 89.1134 | 77 | 39 | 77 | 20 | 16 | 80.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | het | 79.6992 | 86.8852 | 73.6111 | 90.4762 | 53 | 8 | 53 | 19 | 15 | 78.9474 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | * | 60.4431 | 58.7629 | 62.2222 | 95.9441 | 57 | 40 | 56 | 34 | 24 | 70.5882 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | het | 71.2121 | 92.1569 | 58.0247 | 95.0670 | 47 | 4 | 47 | 34 | 24 | 70.5882 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 3.3333 | 0.0000 | 0.0000 | 1 | 29 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 72.0000 | 56.2500 | 100.0000 | 98.4402 | 9 | 7 | 9 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l100_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 87.4735 | 79.3814 | 97.4026 | 83.5118 | 77 | 20 | 75 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 91.7496 | 88.2353 | 95.5556 | 85.3420 | 45 | 6 | 43 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 82.3529 | 70.0000 | 100.0000 | 69.6970 | 21 | 9 | 20 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 81.4815 | 68.7500 | 100.0000 | 87.2340 | 11 | 5 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 97.2585 | 0 | 0 | 21 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 96.8912 | 0 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.4522 | 0 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.7578 | 0 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l100_m2_e1 | * | 99.3071 | 98.8520 | 99.7664 | 59.3097 | 73879 | 858 | 73876 | 173 | 38 | 21.9653 | |
| ltrigg-rtg1 | SNP | * | map_l100_m2_e1 | het | 99.0006 | 98.3219 | 99.6887 | 57.1362 | 46111 | 787 | 46109 | 144 | 12 | 8.3333 | |
| ltrigg-rtg1 | SNP | * | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.3226 | 43 | 0 | 43 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l100_m2_e1 | homalt | 99.8200 | 99.7446 | 99.8955 | 62.4711 | 27725 | 71 | 27724 | 29 | 26 | 89.6552 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e1 | * | 97.6390 | 96.3525 | 98.9603 | 79.8456 | 3619 | 137 | 3617 | 38 | 6 | 15.7895 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e1 | het | 97.4082 | 96.3295 | 98.5114 | 78.5661 | 2257 | 86 | 2250 | 34 | 4 | 11.7647 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e1 | hetalt | 91.3580 | 84.0909 | 100.0000 | 91.6667 | 111 | 21 | 113 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e1 | homalt | 98.6597 | 97.6581 | 99.6820 | 78.7966 | 1251 | 30 | 1254 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 96.9697 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 94.1176 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e1 | * | 99.3168 | 98.8481 | 99.7899 | 59.0336 | 48915 | 570 | 48917 | 103 | 29 | 28.1553 | |
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e1 | het | 99.0241 | 98.3236 | 99.7346 | 57.0635 | 30441 | 519 | 30443 | 81 | 7 | 8.6420 | |