PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56001-56050 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 96.0469 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.4444 | 94.4444 | 94.4444 | 95.1482 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.7500 | 2 | 1 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.5000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | * | 87.6847 | 91.7526 | 83.9623 | 94.6973 | 89 | 8 | 89 | 17 | 4 | 23.5294 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | het | 87.1029 | 96.0784 | 79.6610 | 95.7645 | 49 | 2 | 47 | 12 | 4 | 33.3333 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 78.4000 | 25 | 5 | 27 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 93.7500 | 75.0000 | 95.8420 | 15 | 1 | 15 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | * | 98.3429 | 98.6422 | 98.0454 | 86.0496 | 3705 | 51 | 3712 | 74 | 17 | 22.9730 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | het | 98.0718 | 98.6342 | 97.5158 | 86.6842 | 2311 | 32 | 2316 | 59 | 11 | 18.6441 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | hetalt | 94.8678 | 90.9091 | 99.1870 | 86.1953 | 120 | 12 | 122 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | homalt | 99.1826 | 99.4536 | 98.9130 | 84.6885 | 1274 | 7 | 1274 | 14 | 6 | 42.8571 | |
| bgallagher-sentieon | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | * | 86.2745 | 84.6154 | 88.0000 | 96.2798 | 22 | 4 | 22 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | het | 85.7143 | 83.3333 | 88.2353 | 95.7500 | 15 | 3 | 15 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.0000 | 2 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.4138 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e1 | * | 61.2013 | 44.1254 | 99.8365 | 85.2564 | 32978 | 41759 | 32972 | 54 | 14 | 25.9259 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e1 | het | 64.0057 | 47.1171 | 99.7652 | 87.0062 | 22097 | 24801 | 22091 | 52 | 14 | 26.9231 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e1 | hetalt | 51.7241 | 34.8837 | 100.0000 | 90.7407 | 15 | 28 | 15 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l100_m2_e1 | homalt | 56.2073 | 39.0920 | 99.9816 | 79.6586 | 10866 | 16930 | 10866 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | map_l100_m2_e1 | * | 62.6607 | 45.6542 | 99.8585 | 84.1129 | 22592 | 26893 | 22588 | 32 | 12 | 37.5000 | |
| asubramanian-gatk | SNP | ti | map_l100_m2_e1 | het | 65.2727 | 48.4981 | 99.7873 | 85.9875 | 15015 | 15945 | 15011 | 32 | 12 | 37.5000 | |
| asubramanian-gatk | SNP | ti | map_l100_m2_e1 | hetalt | 55.8140 | 38.7097 | 100.0000 | 88.7850 | 12 | 19 | 12 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l100_m2_e1 | homalt | 58.0606 | 40.9052 | 100.0000 | 78.3356 | 7565 | 10929 | 7565 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l100_m2_e1 | * | 58.2603 | 41.1264 | 99.8655 | 87.2297 | 10398 | 14885 | 10396 | 14 | 2 | 14.2857 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e1 | het | 61.4944 | 44.4347 | 99.8167 | 88.7261 | 7082 | 8856 | 7080 | 13 | 2 | 15.3846 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 51.7241 | 34.8837 | 100.0000 | 90.6832 | 15 | 28 | 15 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l100_m2_e1 | homalt | 52.3802 | 35.4870 | 99.9697 | 82.0942 | 3301 | 6001 | 3301 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 93.2442 | 88.7931 | 98.1651 | 89.8793 | 103 | 13 | 107 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 92.3908 | 88.5246 | 96.6102 | 90.6051 | 54 | 7 | 57 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.6446 | 20 | 2 | 21 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e1 | homalt | 93.5484 | 87.8788 | 100.0000 | 91.1585 | 29 | 4 | 29 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e1 | * | 93.0516 | 89.7370 | 96.6205 | 87.5894 | 1740 | 199 | 1744 | 61 | 7 | 11.4754 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 91.0922 | 87.4606 | 95.0385 | 88.5235 | 1109 | 159 | 1111 | 58 | 6 | 10.3448 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 96.9697 | 94.1176 | 100.0000 | 90.9259 | 48 | 3 | 49 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e1 | homalt | 96.6837 | 94.0323 | 99.4889 | 84.6255 | 583 | 37 | 584 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e1 | * | 93.4397 | 90.5455 | 96.5251 | 89.0301 | 249 | 26 | 250 | 9 | 3 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 92.0981 | 90.3704 | 93.8931 | 91.8176 | 122 | 13 | 123 | 8 | 2 | 25.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.0355 | 91.7808 | 98.5294 | 74.4361 | 67 | 6 | 67 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e1 | homalt | 94.4882 | 89.5522 | 100.0000 | 87.8543 | 60 | 7 | 60 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e1 | * | 91.2086 | 85.0896 | 98.2759 | 87.9905 | 1187 | 208 | 1197 | 21 | 4 | 19.0476 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e1 | het | 87.1298 | 78.8889 | 97.2932 | 90.0657 | 639 | 171 | 647 | 18 | 2 | 11.1111 | |