PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
5551-5600 / 86044 show all
gduggal-snapplatSNP*HG002complexvarhetalt
91.0113
86.7742
95.6835
42.9158
269412661212
100.0000
gduggal-snapplatSNP*HG002complexvarhomalt
98.9173
98.0729
99.7763
21.2516
2830145561282787634338
53.3123
ghariani-varprowlINDELD6_15HG002complexvar*
76.3894
73.9155
79.0345
58.8274
3919138339131038969
93.3526
ghariani-varprowlINDELD6_15HG002complexvarhet
84.7743
95.1923
76.4117
58.8552
29701502977919877
95.4298
ghariani-varprowlINDELD6_15HG002complexvarhetalt
0.0000
1.6782
0.0000
0.0000
17996000
ghariani-varprowlINDELD6_15HG002complexvarhomalt
83.9832
79.7263
88.7204
58.7246
93223793611992
77.3109
ghariani-varprowlINDELI6_15HG002complexvar*
71.5536
66.2145
77.8293
58.1077
317316193191909871
95.8196
ghariani-varprowlINDELI6_15HG002complexvarhet
82.0261
92.4841
73.6930
59.9920
21781772213790772
97.7215
ghariani-varprowlINDELI6_15HG002complexvarhetalt
0.0000
1.7989
0.0000
0.0000
221201000
ghariani-varprowlINDELI6_15HG002complexvarhomalt
84.4108
80.1483
89.1522
51.9071
97324197811999
83.1933
ghariani-varprowlSNP*HG002complexvar*
99.3539
99.7064
99.0038
22.0629
752159221575254975721579
20.8531
ghariani-varprowlSNP*HG002complexvarhet
99.2312
99.6262
98.8393
22.3346
46375217404640235449138
2.5326
ghariani-varprowlSNP*HG002complexvarhetalt
0.0000
0.0000
0.0000
0310000
ghariani-varprowlSNP*HG002complexvarhomalt
99.6051
99.9428
99.2696
21.6199
28840716528852621231441
67.8756
ghariani-varprowlSNPtiHG002complexvar*
99.5322
99.7412
99.3241
19.7678
50711313165072833452789
22.8563
ghariani-varprowlSNPtiHG002complexvarhet
99.4535
99.6801
99.2280
19.8744
3137541007313878244284
3.4398
ghariani-varprowlSNPtiHG002complexvarhetalt
0.0000
0.0000
0.0000
0207000
ghariani-varprowlSNPtiHG002complexvarhomalt
99.7133
99.9473
99.4805
19.5938
1933591021934051010705
69.8020
ghariani-varprowlINDELI1_5HG002complexvar*
92.9673
92.2577
93.6879
54.6199
3077925833065020651585
76.7554
ghariani-varprowlINDELI1_5HG002complexvarhet
95.0596
98.1636
92.1459
60.4443
178543341783315201222
80.3947
ghariani-varprowlINDELI1_5HG002complexvarhetalt
0.0000
2.8389
0.0000
0.0000
491677000
ghariani-varprowlINDELI1_5HG002complexvarhomalt
95.8338
95.7466
95.9213
42.3182
1287657212817545363
66.6055
ghariani-varprowlINDELD1_5HG002complexvar*
93.6809
93.5932
93.7688
56.5500
3061920963047320251375
67.9012
ghariani-varprowlINDELD1_5HG002complexvarhet
95.4621
98.5649
92.5488
58.7032
204672982040716431130
68.7766
ghariani-varprowlINDELD1_5HG002complexvarhetalt
0.0000
2.2929
0.0000
0.0000
311321000
ghariani-varprowlINDELD1_5HG002complexvarhomalt
95.9196
95.4992
96.3438
51.1776
1012147710066382245
64.1361
ghariani-varprowlINDELI16_PLUSHG002complexvar*
68.3069
62.1849
75.7660
65.1794
814495816261254
97.3180
ghariani-varprowlINDELI16_PLUSHG002complexvarhet
78.0918
86.6165
71.0947
66.0117
57689578235228
97.0213
ghariani-varprowlINDELI16_PLUSHG002complexvarhetalt
0.0000
0.8955
0.0000
0.0000
3332000
ghariani-varprowlINDELI16_PLUSHG002complexvarhomalt
82.5036
76.0518
90.1515
62.3395
235742382626
100.0000
hfeng-pmm1INDEL*HG002complexvar*
99.1357
98.4949
99.7850
57.1428
75780115875642163121
74.2331
hfeng-pmm1INDEL*HG002complexvarhet
98.8731
97.9378
99.8265
56.4583
45259953448887843
55.1282
hfeng-pmm1INDEL*HG002complexvarhetalt
97.6611
95.6475
99.7614
69.0744
3538161376398
88.8889
hfeng-pmm1INDEL*HG002complexvarhomalt
99.7782
99.8372
99.7192
55.9241
2698344269917670
92.1053
hfeng-pmm1INDELC16_PLUSHG002complexvar*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC16_PLUSHG002complexvarhet
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC16_PLUSHG002complexvarhetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC16_PLUSHG002complexvarhomalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELD16_PLUSHG002complexvar*
96.9275
95.2526
98.6624
64.9632
15657815492110
47.6190
hfeng-pmm1INDELD16_PLUSHG002complexvarhet
96.2431
94.4896
98.0630
66.6532
104661810166
37.5000
hfeng-pmm1INDELD16_PLUSHG002complexvarhetalt
96.7722
94.3320
99.3421
47.8261
2331445333
100.0000
hfeng-pmm1INDELD16_PLUSHG002complexvarhomalt
99.1334
98.9619
99.3056
74.5133
286328621
50.0000
hfeng-pmm1INDELD1_5HG002complexvar*
99.1888
98.4747
99.9133
56.8376
32216499322672818
64.2857
hfeng-pmm1INDELD1_5HG002complexvarhet
98.9178
97.9388
99.9165
54.1519
2033742820340179
52.9412
hfeng-pmm1INDELD1_5HG002complexvarhetalt
97.9678
96.1538
99.8514
73.2565
130052134421
50.0000
hfeng-pmm1INDELD1_5HG002complexvarhomalt
99.8679
99.8207
99.9150
58.2795
10579191058398
88.8889
hfeng-pmm1INDELD6_15HG002complexvar*
97.1047
94.8887
99.4267
56.6618
503127150292925
86.2069
hfeng-pmm1INDELD6_15HG002complexvarhet
95.9519
92.8205
99.3019
57.0271
289622428452017
85.0000
hfeng-pmm1INDELD6_15HG002complexvarhetalt
97.6862
95.6565
99.8039
48.4848
96944101821
50.0000
hfeng-pmm1INDELD6_15HG002complexvarhomalt
99.5730
99.7434
99.4032
61.2103
11663116677
100.0000