PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55751-55800 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 65.3465 | 48.5294 | 100.0000 | 90.4348 | 33 | 35 | 33 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e0 | homalt | 80.7339 | 67.6923 | 100.0000 | 88.0759 | 44 | 21 | 44 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | * | 98.8866 | 99.1651 | 98.6097 | 70.4745 | 24824 | 209 | 24824 | 350 | 55 | 15.7143 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | het | 98.4689 | 99.0556 | 97.8891 | 72.5475 | 15628 | 149 | 15628 | 337 | 48 | 14.2433 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | hetalt | 98.7952 | 97.6190 | 100.0000 | 78.0749 | 41 | 1 | 41 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | homalt | 99.6083 | 99.3597 | 99.8582 | 65.9435 | 9155 | 59 | 9155 | 13 | 7 | 53.8462 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e0 | * | 80.6607 | 68.1018 | 98.8989 | 92.5303 | 2515 | 1178 | 2515 | 28 | 11 | 39.2857 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e0 | het | 83.4500 | 72.3450 | 98.5824 | 93.3707 | 1669 | 638 | 1669 | 24 | 8 | 33.3333 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e0 | hetalt | 64.5161 | 48.0000 | 98.3607 | 95.7639 | 60 | 65 | 60 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e0 | homalt | 76.6829 | 62.3315 | 99.6198 | 88.8339 | 786 | 475 | 786 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | * | 52.2346 | 37.7778 | 84.6154 | 88.4956 | 34 | 56 | 33 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | het | 61.7131 | 47.9167 | 86.6667 | 86.2385 | 23 | 25 | 26 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 7.6923 | 0.0000 | 0.0000 | 2 | 24 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 65.2850 | 56.2500 | 77.7778 | 92.5620 | 9 | 7 | 7 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | * | 84.6007 | 85.6397 | 83.5866 | 84.4811 | 1640 | 275 | 1650 | 324 | 122 | 37.6543 | |
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | het | 83.2747 | 87.6592 | 79.3079 | 85.1214 | 1101 | 155 | 1123 | 293 | 93 | 31.7406 | |
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 31.2500 | 0.0000 | 0.0000 | 15 | 33 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | homalt | 89.8935 | 85.7610 | 94.4444 | 82.5788 | 524 | 87 | 527 | 31 | 29 | 93.5484 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | * | 69.8453 | 62.5000 | 79.1469 | 85.8199 | 165 | 99 | 167 | 44 | 27 | 61.3636 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | het | 75.7043 | 77.0992 | 74.3590 | 85.9586 | 101 | 30 | 116 | 40 | 23 | 57.5000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 22.0588 | 0.0000 | 0.0000 | 15 | 53 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | homalt | 83.1614 | 75.3846 | 92.7273 | 85.4111 | 49 | 16 | 51 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e0 | * | 21.0526 | 15.3846 | 33.3333 | 82.3529 | 4 | 22 | 4 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e0 | het | 10.5263 | 5.5556 | 100.0000 | 92.3077 | 1 | 17 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 32.4324 | 40.0000 | 27.2727 | 80.0000 | 2 | 3 | 3 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | * | map_l100_m2_e0 | * | 72.4393 | 72.7593 | 72.1222 | 84.8313 | 2687 | 1006 | 2763 | 1068 | 640 | 59.9251 | |
| anovak-vg | INDEL | * | map_l100_m2_e0 | het | 70.9065 | 67.2735 | 74.9542 | 86.8513 | 1552 | 755 | 1637 | 547 | 155 | 28.3364 | |
| anovak-vg | INDEL | * | map_l100_m2_e0 | hetalt | 0.0000 | 26.4000 | 0.0000 | 0.0000 | 33 | 92 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l100_m2_e0 | homalt | 76.7170 | 87.3910 | 68.3667 | 80.9419 | 1102 | 159 | 1126 | 521 | 485 | 93.0902 | |
| anovak-vg | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 37.5000 | 97.1326 | 0 | 0 | 3 | 5 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 28.5714 | 97.1193 | 0 | 0 | 2 | 5 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.2222 | 0 | 0 | 1 | 0 | 0 | ||