PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55601-55650 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | * | 66.6667 | 53.3333 | 88.8889 | 86.2595 | 48 | 42 | 48 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | het | 72.8311 | 60.4167 | 91.6667 | 82.9384 | 29 | 19 | 33 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 47.0588 | 30.7692 | 100.0000 | 63.6364 | 8 | 18 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 73.3333 | 68.7500 | 78.5714 | 91.8129 | 11 | 5 | 11 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e0 | * | 99.3504 | 99.7181 | 98.9854 | 68.9913 | 48823 | 138 | 47903 | 491 | 32 | 6.5173 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e0 | het | 99.0330 | 99.6245 | 98.4486 | 71.1792 | 30507 | 115 | 29825 | 470 | 19 | 4.0426 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e0 | hetalt | 99.8165 | 100.0000 | 99.6337 | 65.9176 | 30 | 0 | 272 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e0 | homalt | 99.8811 | 99.8744 | 99.8878 | 64.4546 | 18286 | 23 | 17806 | 20 | 12 | 60.0000 | |
| gduggal-bwafb | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | ti | map_l100_m2_e0 | * | 96.6693 | 97.1855 | 96.1585 | 74.8078 | 47583 | 1378 | 47134 | 1883 | 157 | 8.3378 | |
| gduggal-bwavard | SNP | ti | map_l100_m2_e0 | het | 95.6400 | 97.2699 | 94.0639 | 78.7568 | 29786 | 836 | 29537 | 1864 | 142 | 7.6180 | |
| gduggal-bwavard | SNP | ti | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l100_m2_e0 | homalt | 98.5295 | 97.2036 | 99.8921 | 62.3227 | 17797 | 512 | 17597 | 19 | 15 | 78.9474 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e0 | * | 95.9136 | 97.8069 | 94.0922 | 76.6349 | 24484 | 549 | 24400 | 1532 | 99 | 6.4621 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e0 | het | 94.4449 | 98.1175 | 91.0373 | 80.3474 | 15480 | 297 | 15429 | 1519 | 88 | 5.7933 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 42 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l100_m2_e0 | homalt | 98.7765 | 97.7209 | 99.8553 | 63.6981 | 9004 | 210 | 8971 | 13 | 11 | 84.6154 | |
| gduggal-snapfb | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | map_l100_m2_e0 | * | 93.4957 | 91.3079 | 95.7910 | 84.8783 | 3372 | 321 | 3391 | 149 | 39 | 26.1745 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e0 | het | 93.1137 | 91.5475 | 94.7345 | 82.7714 | 2112 | 195 | 2159 | 120 | 22 | 18.3333 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e0 | hetalt | 60.8114 | 49.6000 | 78.5714 | 93.3439 | 62 | 63 | 33 | 9 | 5 | 55.5556 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e0 | homalt | 96.6525 | 95.0040 | 98.3593 | 87.2369 | 1198 | 63 | 1199 | 20 | 12 | 60.0000 | |
| gduggal-snapfb | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | map_l100_m2_e0 | * | 96.4651 | 97.4352 | 95.5142 | 75.4124 | 72067 | 1897 | 71074 | 3338 | 242 | 7.2499 | |
| gduggal-bwavard | SNP | * | map_l100_m2_e0 | het | 95.2824 | 97.5581 | 93.1104 | 79.2787 | 45266 | 1133 | 44693 | 3307 | 217 | 6.5618 | |
| gduggal-bwavard | SNP | * | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 42 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | map_l100_m2_e0 | homalt | 98.6138 | 97.3767 | 99.8826 | 62.7969 | 26801 | 722 | 26381 | 31 | 25 | 80.6452 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e0 | * | 55.4705 | 58.8889 | 52.4272 | 93.3117 | 53 | 37 | 54 | 49 | 21 | 42.8571 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e0 | het | 61.8474 | 87.5000 | 47.8261 | 93.3765 | 42 | 6 | 44 | 48 | 20 | 41.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 3.8462 | 0.0000 | 0.0000 | 1 | 25 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 74.0741 | 62.5000 | 90.9091 | 92.7152 | 10 | 6 | 10 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e0 | * | 69.3878 | 65.3846 | 73.9130 | 91.8149 | 17 | 9 | 17 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 91.7969 | 15 | 3 | 15 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 92.0000 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e0 | * | 93.9648 | 93.7865 | 94.1438 | 86.6818 | 1283 | 85 | 1270 | 79 | 38 | 48.1013 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e0 | het | 94.4176 | 97.9823 | 91.1032 | 89.6399 | 777 | 16 | 768 | 75 | 36 | 48.0000 | |