PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
55551-55600 / 86044 show all
hfeng-pmm2SNPtvmap_l100_m2_e0hetalt
100.0000
100.0000
100.0000
78.8945
4204200
hfeng-pmm2SNPtvmap_l100_m2_e0homalt
99.8535
99.8589
99.8481
64.9206
9201139201145
35.7143
gduggal-bwafbSNPtimap_l100_m2_e0*
99.1045
99.1095
99.0994
68.4259
4852543648527441108
24.4898
gduggal-bwafbSNPtimap_l100_m2_e0het
98.8152
98.9975
98.6336
70.5993
303153073031742095
22.6190
gduggal-bwafbSNPtimap_l100_m2_e0hetalt
100.0000
100.0000
100.0000
75.2066
3003000
gduggal-bwafbSNPtimap_l100_m2_e0homalt
99.5892
99.2954
99.8846
63.9034
18180129181802113
61.9048
gduggal-bwafbSNP*map_l100_m2_e0*
99.0302
99.1280
98.9327
69.1496
7331964573321791163
20.6068
gduggal-bwafbSNP*map_l100_m2_e0het
98.6971
99.0172
98.3791
71.2956
4594345645945757143
18.8904
gduggal-bwafbSNP*map_l100_m2_e0hetalt
98.7952
97.6190
100.0000
78.0749
4114100
gduggal-bwafbSNP*map_l100_m2_e0homalt
99.5956
99.3169
99.8758
64.6135
27335188273353420
58.8235
gduggal-bwafbINDELI6_15map_l100_m2_e0*
86.3981
76.7241
98.8636
82.8460
89278711
100.0000
gduggal-bwafbINDELI6_15map_l100_m2_e0het
82.6923
70.4918
100.0000
82.5175
43185000
gduggal-bwafbINDELI6_15map_l100_m2_e0hetalt
84.2105
72.7273
100.0000
80.5556
166700
gduggal-bwafbINDELI6_15map_l100_m2_e0homalt
93.7500
90.9091
96.7742
83.7696
3033011
100.0000
gduggal-bwafbINDELD1_5map_l100_m2_e0*
97.6865
97.0757
98.3051
84.3163
1859561856326
18.7500
gduggal-bwafbINDELD1_5map_l100_m2_e0het
97.5348
97.2930
97.7778
83.2980
1222341232282
7.1429
gduggal-bwafbINDELD1_5map_l100_m2_e0hetalt
79.9308
68.7500
95.4545
93.6047
33152111
100.0000
gduggal-bwafbINDELD1_5map_l100_m2_e0homalt
99.1786
98.8543
99.5050
85.3976
604760333
100.0000
gduggal-bwafbINDELI16_PLUSmap_l100_m2_e0*
37.5000
23.0769
100.0000
86.3636
620600
gduggal-bwafbINDELI16_PLUSmap_l100_m2_e0het
36.3636
22.2222
100.0000
81.8182
414400
gduggal-bwafbINDELI16_PLUSmap_l100_m2_e0hetalt
0.0000
100.0000
03000
gduggal-bwafbINDELI16_PLUSmap_l100_m2_e0homalt
57.1429
40.0000
100.0000
90.0000
23200
gduggal-bwafbINDELI1_5map_l100_m2_e0*
97.5922
96.4181
98.7952
83.8737
1319491312165
31.2500
gduggal-bwafbINDELI1_5map_l100_m2_e0het
96.7924
94.9559
98.7013
83.9181
75340760101
10.0000
gduggal-bwafbINDELI1_5map_l100_m2_e0hetalt
90.0000
81.8182
100.0000
93.3131
3682200
gduggal-bwafbINDELI1_5map_l100_m2_e0homalt
99.3440
99.8117
98.8806
82.8095
530153064
66.6667
gduggal-bwafbINDELD6_15map_l100_m2_e0*
89.1561
82.1970
97.4026
85.7934
2174722563
50.0000
gduggal-bwafbINDELD6_15map_l100_m2_e0het
92.3597
87.7863
97.4359
83.4921
1151615241
25.0000
gduggal-bwafbINDELD6_15map_l100_m2_e0hetalt
71.6612
58.8235
91.6667
80.3279
40281111
100.0000
gduggal-bwafbINDELD6_15map_l100_m2_e0homalt
96.8750
95.3846
98.4127
89.8387
6236211
100.0000
eyeh-varpipeSNP*map_l100_m2_e0*
98.6905
99.7377
97.6651
69.5065
7377019471526171051
2.9825
eyeh-varpipeSNP*map_l100_m2_e0het
97.9986
99.6659
96.3860
71.4860
4624415544753167834
2.0262
eyeh-varpipeSNP*map_l100_m2_e0hetalt
99.6753
100.0000
99.3528
67.7116
42030721
50.0000
eyeh-varpipeSNP*map_l100_m2_e0homalt
99.8725
99.8583
99.8868
65.3085
2748439264663016
53.3333
eyeh-varpipeSNPtvmap_l100_m2_e0*
97.4043
99.7763
95.1424
70.6557
249775624816126721
1.6575
eyeh-varpipeSNPtvmap_l100_m2_e0het
96.0096
99.7465
92.5426
72.2574
157374015549125316
1.2769
eyeh-varpipeSNPtvmap_l100_m2_e0hetalt
99.3865
100.0000
98.7805
70.8703
42016221
50.0000
eyeh-varpipeSNPtvmap_l100_m2_e0homalt
99.8474
99.8264
99.8684
67.1566
9198169105124
33.3333
gduggal-bwafbINDELC16_PLUSmap_l100_m2_e0*
0.0000
0.0000
0.0000
00000
gduggal-bwafbINDELC16_PLUSmap_l100_m2_e0het
0.0000
0.0000
0.0000
00000
gduggal-bwafbINDELC16_PLUSmap_l100_m2_e0hetalt
0.0000
0.0000
0.0000
00000
gduggal-bwafbINDELC16_PLUSmap_l100_m2_e0homalt
0.0000
0.0000
0.0000
00000
gduggal-bwafbINDEL*map_l100_m2_e0*
96.2600
94.2865
98.3179
84.2676
348221135076020
33.3333
gduggal-bwafbINDEL*map_l100_m2_e0het
95.9110
93.8882
98.0228
83.5180
21661412231457
15.5556
gduggal-bwafbINDEL*map_l100_m2_e0hetalt
75.4805
61.6000
97.4359
93.3219
77483811
100.0000
gduggal-bwafbINDEL*map_l100_m2_e0homalt
98.5676
98.2554
98.8818
84.8792
12392212381412
85.7143
gduggal-bwafbINDELC6_15map_l100_m2_e0*
0.0000
100.0000
00000
gduggal-bwafbINDELC6_15map_l100_m2_e0het
0.0000
100.0000
00000
gduggal-bwafbINDELC6_15map_l100_m2_e0hetalt
0.0000
100.0000
00000
gduggal-bwafbINDELC6_15map_l100_m2_e0homalt
0.0000
100.0000
00000